Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27l12
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844... 29 2.4
01_05_0606 - 23607170-23607568,23607738-23607941,23608035-236081... 29 2.4
07_03_0907 - 22490158-22490555,22490647-22491250 28 3.1
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606... 28 4.2
06_03_0590 + 22574985-22578018,22578125-22578469,22579171-225792... 27 5.5
01_06_1740 - 39575614-39576981 27 5.5
08_02_0845 - 21809924-21810265,21810360-21810365 27 7.3
07_03_0421 - 18011768-18011832,18012039-18012081,18012194-18012784 27 7.3
11_06_0126 - 20378611-20379719,20380081-20381239 27 9.6
07_01_1131 - 10510404-10511000 27 9.6
>04_04_0020 +
22182649-22182829,22183900-22183999,22184415-22184491,
22184718-22184809,22188655-22189767
Length = 520
Score = 28.7 bits (61), Expect = 2.4
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Frame = +2
Query: 71 EVESAR-DIFSRQRTRQYQF-LHLHHVLCGVRCHS---AY*IVTPGATQRTRSDSLQ*RH 235
E+E R D S +++ QF L+ L V+ HS A PGAT S +
Sbjct: 393 EMERRRLDFASELESQRVQFFLNTQMELSQVKDHSSSPANAAAPPGATGGAGGTSRRMAS 452
Query: 236 ADLARSNGNGVRGRRATTASEHTH*CSLATSR---RYXISVLRLFGLRGTSDGSRGANNR 406
+ A ++GN R R + H H SR +Y + + + SDG + ++
Sbjct: 453 VNDASASGNYHRRYRVSDGGRHRHHPQPPPSRPHYQYHENNIAVAAAAAASDGEQSSDEE 512
Query: 407 SDKNARSR 430
D+ S+
Sbjct: 513 DDEEEESQ 520
>01_05_0606 -
23607170-23607568,23607738-23607941,23608035-23608113,
23608371-23608430,23608514-23608611,23608703-23608891,
23610670-23611368
Length = 575
Score = 28.7 bits (61), Expect = 2.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 264 GSEGGEPLPPANIPIDAVWQPV 329
G G EP PP P +++W P+
Sbjct: 106 GDNGDEPRPPTVAPAESLWAPI 127
>07_03_0907 - 22490158-22490555,22490647-22491250
Length = 333
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +3
Query: 207 PARTRYNEDMQTWQ---GRTETGSEGGEPLPP 293
P R+ + TW+ GR ++GS GGE PP
Sbjct: 231 PPLARHLKKSDTWETRPGRRQSGSGGGEDAPP 262
>12_01_0991 -
10057736-10058249,10058412-10059241,10059266-10060633,
10061785-10062327,10066274-10066498,10066590-10066640
Length = 1176
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 190 RSNNSVSTMTPNTAKNMMKMKKLILARSLAREDIARALHFIVPTLISHGHWTK 32
+ NN +STM P++ KN+ +K L L + DI + + + HW K
Sbjct: 583 QGNNLMSTMIPSSFKNLCNLKVLDLRSTNTTGDIRELIE-----KLPNCHWNK 630
>06_03_0590 +
22574985-22578018,22578125-22578469,22579171-22579217,
22579450-22579573,22579622-22579686
Length = 1204
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 187 SNNSVSTMTPNTAKNMMKMKKLILARSLAREDI 89
S N + P+T N+ K+K L+LAR+ DI
Sbjct: 181 SRNKLQGSIPSTFGNLPKLKTLVLARNRLTGDI 213
>01_06_1740 - 39575614-39576981
Length = 455
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 207 PARTRYNEDMQTWQGRTETGSEGGEPLPPANIP 305
PAR R E+ GRT + G P PPA +P
Sbjct: 107 PARLRRAEEGS--HGRTPWSAPAGHPAPPAAVP 137
>08_02_0845 - 21809924-21810265,21810360-21810365
Length = 115
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 207 PARTRYNEDMQTWQGRTETGSEGGEPLPPANIPIDAVWQPVAGTXFRFYVYSA 365
P TRY + GR G G P PP+++ + +V PV Y+Y A
Sbjct: 50 PRLTRYRLLQRGGHGRARRGDNAGNP-PPSSLYMLSV-VPVPRLCCSMYIYDA 100
>07_03_0421 - 18011768-18011832,18012039-18012081,18012194-18012784
Length = 232
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 243 WQGRTETGSEGGEPLPPANIPIDAVWQPVAG 335
W+GR G EGG + ++ V PV G
Sbjct: 174 WRGRGGGGEEGGREVERGEAAVERVASPVTG 204
>11_06_0126 - 20378611-20379719,20380081-20381239
Length = 755
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 187 SNNSVSTMTPNTAKNMMKMKKLILARSLA 101
SNN + +M PN +N+ ++ L L SL+
Sbjct: 296 SNNDLGSMAPNLLRNLCNLEVLDLDESLS 324
>07_01_1131 - 10510404-10511000
Length = 198
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 195 RPNEPARTRYNEDMQTWQGRTETGSEGGEPLPPANIPI 308
R ++PAR +D G GS+GGE +P P+
Sbjct: 6 RDDKPARMNSEDD----DGHRRWGSDGGEAMPRTTSPV 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,865,611
Number of Sequences: 37544
Number of extensions: 259685
Number of successful extensions: 788
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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