Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27l12
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-6|AAV34803.1|  780|Caenorhabditis elegans Hypothetical pr...    32   0.23 
U97193-5|AAV34804.1|  783|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U00057-1|AAA50726.2|  347|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U29488-8|AAA68777.1|  320|Caenorhabditis elegans Hypothetical pr...    27   5.0  

>U97193-6|AAV34803.1|  780|Caenorhabditis elegans Hypothetical
           protein C06A5.3a protein.
          Length = 780

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 196 RSRSNNSVSTMTPNTAKNMMKMKKLILARSLAREDIARALHFIV---PTLISHGH 41
           RSRS++ +  +TP+T+  ++      L+ SL   D AR  H+ V   P + + GH
Sbjct: 443 RSRSHSPIPQITPSTSTGLLGRSNSPLSSSLRIRDRARPKHYKVEKTPPISASGH 497


>U97193-5|AAV34804.1|  783|Caenorhabditis elegans Hypothetical
           protein C06A5.3b protein.
          Length = 783

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 196 RSRSNNSVSTMTPNTAKNMMKMKKLILARSLAREDIARALHF 71
           RSRS++ +  +TP+T+  ++      L+ SL   D AR  H+
Sbjct: 443 RSRSHSPIPQITPSTSTGLLGRSNSPLSSSLRIRDRARPKHY 484


>U00057-1|AAA50726.2|  347|Caenorhabditis elegans Hypothetical
           protein T24G10.2 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 269 RGRRATTASEHTH*CSLATSRRYXISVLRLFGLRGTSDGSRGANNRSDK 415
           RG++ TT        S+ ++RR   S   L  +R TS+G R ANN+  K
Sbjct: 134 RGKKTTTRIPPDMASSIKSTRRAAASDA-LKQIRNTSEGGRFANNKKKK 181


>Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical
           protein F02E9.3 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 189 LERPNEPARTRYNEDMQTWQGRTETGSEGGEPL 287
           +E+  E A    +   +T+Q R+ TGSE   P+
Sbjct: 213 MEKEREDANNSSSRSRKTYQSRSPTGSEDSSPV 245


>Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical
           protein F23A7.5 protein.
          Length = 632

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 383 GSRGANNRSDKNARSRPRH 439
           GSRG+  RSD+ AR   RH
Sbjct: 601 GSRGSRRRSDRRARHERRH 619


>U29488-8|AAA68777.1|  320|Caenorhabditis elegans Hypothetical
           protein C56C10.9 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -1

Query: 200 GSLQE*QFSKHYDTEHRKEHDEDEETDIXXXXXXXXXXXRSPLHRADINITWALD 36
           GS+   +F  H+   H K+H + E  D+           +   +R+DI     LD
Sbjct: 119 GSIVWEEFEPHFSKMHEKDHSDSELMDVHTEDPHRVDDEKRMFNRSDITRDGRLD 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,231,830
Number of Sequences: 27780
Number of extensions: 198700
Number of successful extensions: 527
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)