Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27l09
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 28 0.69
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.1
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 2.1
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 2.8
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 4.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 4.8
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 6.4
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 6.4
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 8.4
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 28.3 bits (60), Expect = 0.69
Identities = 21/89 (23%), Positives = 33/89 (37%)
Frame = +3
Query: 153 LERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEY 332
L R+ LS + + I+ + + C + P T DD+ +Y EY
Sbjct: 382 LARRVSSPLSALNQMSQSPIPIRVSSDKDYDSYACHEVVSNPSTLDDDYNYMFVCPPEEY 441
Query: 333 DITTQTVFVSGDDSLVSPPPPAHPDWDAV 419
+T V D L S P P ++V
Sbjct: 442 TYSTDNVRTDSLD-LQSLPTPTLEQLESV 469
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 2.1
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Frame = +3
Query: 189 SHLIDLHCYIKTNITSQFGPLTCMRL-TGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSG 365
S +D+ I+ + S PLT + TG+ G N I Y Y ++T +
Sbjct: 1666 SSSMDMRFIIELLLGSDDSPLTLVGTGTGKSGKLVCNLYKTILKHYVHYGLSTSVPLYTS 1725
Query: 366 DD--SLVS----PPPPAHPDWDAVSPLLSLTFKK 449
+ +L+S PPP H ++D + +++L F+K
Sbjct: 1726 LEKHNLISRSPSSPPPIHTNFDTNADIITL-FEK 1758
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 48 YDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLH 209
+D + SS+ + IH N++ S+H E L K +S+P ++LH
Sbjct: 195 WDTKKVKSSNRNFVTIHELNEHLKNVNSKHSEIDDLLPDKRSIVSLPPSTLNLH 248
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 221 FDVAMEVYKMRWNGKPL-HFLPFQDN 147
F VAME+ K+R +GK L L + DN
Sbjct: 358 FAVAMEIIKLRLSGKSLASILAYDDN 383
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = -2
Query: 402 GEQEVEVILKNHHLRQRQFAW*-CRTRCK*RQYCNPCCRHKCRARR*GACRSKVQIDL*C 226
G++++ +LK H + C C C C++KC G C + I C
Sbjct: 452 GKEDISFLLKGHERKSCSDPIPTCENICGKLLSCGHRCKYKCHLGSCGTCSETLTIPCRC 511
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 357 VSGDDSLVSPPPPAHPDWDAVSPLLSL 437
VS +S+VSPPP P A +P SL
Sbjct: 158 VSAPNSMVSPPPSFQPP-SAAAPATSL 183
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 6.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 14 SQLVCVWRPN-SIRSLSVCFVPSETITNSCLQ*LLC 118
SQ+ +W + + +L F+ + TN+CL+ LLC
Sbjct: 186 SQIASIWAFDWPMMNLQETFIYWDRCTNACLRLLLC 221
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 6.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 354 RQFAW*CRTRCK*RQYCNPCCRHK 283
RQFA CR RC+ +YC+ C+H+
Sbjct: 493 RQFAK-CR-RCRRTKYCSKECQHQ 514
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = -2
Query: 195 DEMEWKAAPFSSVPR---QRPHHAEI---GQTQSSHCRHEFVMVSDGTKQTER 55
DE+++ ++S P + P E+ GQ S HCRH+ + +D T E+
Sbjct: 188 DEIDYLVECYTSEPSLKSREPTDVELFMFGQVNSEHCRHK-IFNADWTIDGEK 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,490
Number of Sequences: 5004
Number of extensions: 44127
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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