Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27l09
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1024 - 25449163-25449824,25451882-25452191 29 1.6
06_01_0087 + 695443-695655,696669-696983 29 1.6
09_06_0142 - 21107878-21109104 29 2.1
12_02_1252 - 27346314-27347327 29 2.8
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 29 2.8
01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574 28 4.8
09_06_0245 - 21833622-21833901,21833988-21834059,21834152-218342... 27 6.4
06_03_1503 - 30621089-30621170,30621258-30621438,30621462-306215... 27 6.4
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537... 27 6.4
11_06_0030 - 19415263-19415388,19415649-19415728,19416196-194162... 27 8.5
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829... 27 8.5
03_04_0024 + 16556026-16556588,16556757-16556868 27 8.5
02_05_0998 + 33391021-33391266,33391354-33391502,33391600-333916... 27 8.5
01_05_0397 + 21753095-21753814 27 8.5
>12_02_1024 - 25449163-25449824,25451882-25452191
Length = 323
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +3
Query: 279 GTYDDNTDYNIA---VIYSEYDITTQTVF--VSGDDSLVSPPPPAHP 404
GT+D D +A V Y + +T F +G+D L PPPPA P
Sbjct: 186 GTFDTALDAALAYDAVSRRLYGLNAKTNFPAAAGEDDLPPPPPPAKP 232
>06_01_0087 + 695443-695655,696669-696983
Length = 175
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = +3
Query: 366 DDSLVSPPPPAH---PDWDAVSPL 428
DD L PPPPA DW+A +PL
Sbjct: 26 DDELPPPPPPASGSGEDWEATTPL 49
>09_06_0142 - 21107878-21109104
Length = 408
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 216 IKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIA 314
I + FG L C+ + GEPG Y T + +A
Sbjct: 259 INRALERHFGDLPCVEVIGEPGRYFAETAFTLA 291
>12_02_1252 - 27346314-27347327
Length = 337
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 204 GL*DEMEWKAAPFSSVPRQRPHHAEIGQTQSSHCRHEFVMVSDGTK 67
GL DEM W P+S+ HA + +H + + DG K
Sbjct: 261 GLADEMTWPQPPYSAFREDSFGHAVLDIKNRTHAYYAWYRNDDGAK 306
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -3
Query: 218 DVAMEVYKMRWNGK 177
D+AMEVYK+ WNG+
Sbjct: 689 DIAMEVYKIVWNGQ 702
>01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574
Length = 212
Score = 27.9 bits (59), Expect = 4.8
Identities = 25/88 (28%), Positives = 34/88 (38%)
Frame = +3
Query: 138 GEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAV 317
G+ + R RLS P H Y+ T P + + P TY +
Sbjct: 91 GDPCIPLRPVQPRLS-PPQPPPYHHYLYTTTA----PPSALHPMSYPATYPAPPRHQQPA 145
Query: 318 IYSEYDITTQTVFVSGDDSLVSPPPPAH 401
+Y I VS D+LV+PPPP H
Sbjct: 146 AVGDYVIGHA---VSAGDALVAPPPPPH 170
>09_06_0245 -
21833622-21833901,21833988-21834059,21834152-21834231,
21834366-21835109,21835212-21835547
Length = 503
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 381 SPPPPAHPDWDAV 419
+PPPPAHPD A+
Sbjct: 91 APPPPAHPDQPAI 103
>06_03_1503 -
30621089-30621170,30621258-30621438,30621462-30621510,
30621777-30621842,30621976-30622014,30622414-30622779,
30623290-30623448,30623805-30623993,30624877-30625168,
30626251-30626597,30627239-30627433,30627518-30627798,
30629525-30629690
Length = 803
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = -3
Query: 344 RGDVVLAVNDGNIVIRVVVISAGLAGKAHAGQRSKLTCNVGFDVAMEVYKMRW 186
+G V + + DG++ V+ +AG + ++ T GFD + V + +W
Sbjct: 454 KGRVFVMLEDGHLAAAVLQDEGIMAGGRRCSESARRTVLGGFDASNYVTERKW 506
>02_05_0225 + 26951993-26952165,26953169-26953567,26953644-26953797,
26954069-26954240,26954494-26954567,26954667-26954763,
26954888-26955000,26955168-26955283,26955960-26956017,
26956512-26956664,26957377-26957460,26957579-26957734,
26958401-26958469,26959212-26959300,26959398-26959560,
26959740-26959874,26959950-26960055,26960143-26960237,
26960508-26960753,26961567-26961635,26961772-26961837,
26961838-26961983,26962348-26962449,26962752-26962899,
26964183-26964239,26964315-26964445,26964535-26964623,
26964694-26965007,26965084-26965176,26966504-26966578,
26966834-26966895,26967254-26967356,26967518-26967676,
26967790-26967930,26967981-26968084,26968146-26968260,
26969017-26969169,26969256-26969417
Length = 1646
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 206 EVYKMRWNGKPLHFLPFQDNGLTM 135
E+Y M G+PL + PF DN M
Sbjct: 1438 ELYDMNLKGRPLAYTPFCDNNKEM 1461
>11_06_0030 -
19415263-19415388,19415649-19415728,19416196-19416232,
19416338-19416460,19417195-19417242,19417335-19417378,
19417461-19417506,19417581-19417623,19418329-19418422,
19418503-19418604,19419936-19420014,19420698-19420964
Length = 362
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 228 ITSQFGPLTC-MRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLV 380
+ S++ P C LTG PG DD+ ++A + + + + VSG D V
Sbjct: 50 LESRWSPTACPFFLTGRPGDDDDDPPASLACGGAHTSSSPEPIEVSGFDEKV 101
>07_01_0985 -
8297560-8297610,8297728-8297939,8298327-8298449,
8298763-8298817,8299940-8300077,8300187-8300261,
8300339-8300398,8301335-8301392,8301948-8302054,
8302484-8302558,8302643-8302838,8304222-8304301,
8308887-8309757,8310672-8310679
Length = 702
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 291 DNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPL 428
D T + Y+ + + Q V + ++S P +HPD +A SP+
Sbjct: 145 DATPLTLPESYNHLENSIQPVPSTQNESTTHPESTSHPDDEATSPI 190
>03_04_0024 + 16556026-16556588,16556757-16556868
Length = 224
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 351 VFVSGDDSLVSPPPPAHPDW 410
+F SL+ PPPP P W
Sbjct: 73 IFSFSSSSLIFPPPPWRPSW 92
>02_05_0998 +
33391021-33391266,33391354-33391502,33391600-33391681,
33391808-33392223,33393659-33393854,33393932-33394074,
33394153-33394327,33394450-33394503,33394701-33394877,
33395832-33395944,33396083-33396265,33396570-33396632,
33396742-33396894,33396922-33396994,33397076-33397206,
33397285-33397420,33397504-33397581,33398146-33398262,
33398473-33398535,33398619-33398720
Length = 949
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 264 LTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPP 389
L G P D DY I V YS +D+ V +SG+ S S P
Sbjct: 320 LLGRPIVMDVFQDY-ILVTYSPFDVHIFHVVISGELSPASSP 360
>01_05_0397 + 21753095-21753814
Length = 239
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 330 YDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSL 437
YD T+ V V+ D PP PD DA SPL L
Sbjct: 139 YDQVTKQVVVAAADRCFLRTPPRRPDVDA-SPLRRL 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,080,503
Number of Sequences: 37544
Number of extensions: 329828
Number of successful extensions: 1207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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