Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27l09
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z73906-8|CAA98120.3|  511|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    27   7.6  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   7.6  

>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = +2

Query: 182 HSISSYRPPLLHQNQ---HYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHHAN 349
           H    Y PP +H +    H+  + T   H  +    H    HG  Y  H +   HHH +
Sbjct: 25  HGAPGYMPPTVHVHTDGGHHGHMDTHHHHDSHHHGGHHGGHHGGHYESHYES-HHHHGH 82


>AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical
           protein Y18H1A.10 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -3

Query: 206 EVYKMRWNGKP--LHFLPFQDNG 144
           EV+   WNG+P  +  LPF++NG
Sbjct: 118 EVFSTVWNGRPVAIKVLPFENNG 140


>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical
           protein C27A7.4 protein.
          Length = 1403

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 60  RFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 188
           R +    KP +I V +D S  D+S  G    L  ++ E+ ++P
Sbjct: 144 RLSYDKFKPSKISVTDDDSGVDESPFGSKESLAERRDEKSTVP 186


>Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical
           protein F15H10.7 protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 85  GFRWDEANRERSYGVWPPYTNKLG 14
           G +W + +R+RSY  + P+  ++G
Sbjct: 476 GEKWTQTDRKRSYSYFDPFPKRIG 499


>Z73906-8|CAA98120.3|  511|Caenorhabditis elegans Hypothetical
           protein D2030.8 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 30  YGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKM-ERLSIPSHLIDL 206
           + G  PY+LSRF+   L+ + + + N    +     G  V   +K++ E +  P+ L + 
Sbjct: 409 FAGSLPYELSRFSHKDLENISVMIKNACENWKGRTVGLRVATSQKRIHEGVKKPALLPNP 468

Query: 207 H 209
           H
Sbjct: 469 H 469


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 267  TGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLV 380
            TG   T  + T +N+A  Y +     +TVFVS D   V
Sbjct: 2239 TGMRSTASEETIFNLAYDYCKQPTEFRTVFVSEDHQFV 2276


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 267  TGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLV 380
            TG   T  + T +N+A  Y +     +TVFVS D   V
Sbjct: 7085 TGMRSTASEETIFNLAYDYCKQPTEFRTVFVSEDHQFV 7122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,360,288
Number of Sequences: 27780
Number of extensions: 264618
Number of successful extensions: 813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)