Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27l09
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 360 SGDDSLVSPPPPAHP 404
           SG +  V+P PP HP
Sbjct: 88  SGQNKAVAPYPPNHP 102


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 360 SGDDSLVSPPPPAHP 404
           SG +  V+P PP HP
Sbjct: 88  SGQNKAVAPYPPNHP 102


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 327 EYDITTQTVFVSGD-DSLVSPPPP 395
           EY  + Q  FV+ D D  + PPPP
Sbjct: 357 EYSPSVQHEFVTFDLDEPLPPPPP 380


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 15/55 (27%), Positives = 21/55 (38%)
 Frame = +2

Query: 179 FHSISSYRPPLLHQNQHYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHH 343
           + S + + PP  H +QH+ S      H     + H   QHG           HHH
Sbjct: 305 YPSTAGFLPPSYHPHQHHPS----QYHPHRGSSPH--HQHGNHTMGPTMGPPHHH 353


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 32  WRPNSIRSLSVCFVPSETI 88
           W P     + + +VPSE I
Sbjct: 97  WNPEEYGGVEMLYVPSENI 115



 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -3

Query: 239 LTCNVGFDVAMEVYKMRWNGKPLHFLPFQDNGLTMLRLVKRRVVIADMNL 90
           +T NV  +     YK++WN       P +  G+ ML +    + + D+ L
Sbjct: 80  MTTNVWVEQRWNDYKLKWN-------PEEYGGVEMLYVPSENIWLPDIVL 122


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 260 HAGQRSKLTCNV 225
           H G+R+ LTC+V
Sbjct: 623 HLGERTTLTCSV 634


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 176 PLHFLPFQD 150
           P+H+LPF D
Sbjct: 431 PMHYLPFGD 439


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 239 LTCNVGFDVAMEVYKMRWN 183
           +T NV  +     YK++WN
Sbjct: 67  MTTNVWVEQEWNDYKLKWN 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,324
Number of Sequences: 438
Number of extensions: 3378
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)