Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27l04
(413 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 27 0.11
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 25 0.34
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 24 0.59
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 24 0.78
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 24 0.78
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 4.2
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 21 5.5
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 5.5
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 21 7.3
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 21 7.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.6
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 20 9.6
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 26.6 bits (56), Expect = 0.11
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 192 KNANIHQNIDGQNHYRRNGTRRDGGR 269
+NAN +QN D QN ++NG R++ R
Sbjct: 440 QNAN-NQNADNQNANKQNGNRQNDNR 464
Score = 22.2 bits (45), Expect = 2.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 192 KNANIHQNIDGQNHYRRNGTRRDGGR 269
+N N QN + QN R+N +R+G R
Sbjct: 495 QNGN-KQNDNKQNGNRQNDNKRNGNR 519
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 25.0 bits (52), Expect = 0.34
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 279 LLEIGHRLCGFRFGGN 232
+LE+GH +CG RF GN
Sbjct: 118 MLELGHEVCG-RFYGN 132
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 24.2 bits (50), Expect = 0.59
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 97 VVWVSAACCTIPP 135
+VW+ AAC ++PP
Sbjct: 164 LVWLGAACISLPP 176
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.8 bits (49), Expect = 0.78
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 100 VWVSAACCTIPPSVEARAHSQQPLSFISNSVKMQ 201
VW C + +++ R ++ + +SNSVKMQ
Sbjct: 1521 VWPDNGCPILYFTIQYRPINEFHWTLVSNSVKMQ 1554
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.8 bits (49), Expect = 0.78
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 100 VWVSAACCTIPPSVEARAHSQQPLSFISNSVKMQ 201
VW C + +++ R ++ + +SNSVKMQ
Sbjct: 1517 VWPDNGCPILYFTIQYRPINEFHWTLVSNSVKMQ 1550
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.4 bits (43), Expect = 4.2
Identities = 5/16 (31%), Positives = 11/16 (68%)
Frame = +1
Query: 97 VVWVSAACCTIPPSVE 144
V+W+ A C +P +++
Sbjct: 177 VIWLLALCLAVPQAIQ 192
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 21.0 bits (42), Expect = 5.5
Identities = 6/35 (17%), Positives = 16/35 (45%)
Frame = +1
Query: 103 WVSAACCTIPPSVEARAHSQQPLSFISNSVKMQIF 207
W+ + C++P ++ + +++ S V F
Sbjct: 161 WIGSVVCSLPQTIVFHLETHPNVTWYSQCVTFNAF 195
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.0 bits (42), Expect = 5.5
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +1
Query: 43 DNF*LRAWKSIAVEGK*FVVWVSAACCT 126
DN + WK +A+ +WV CT
Sbjct: 467 DNEVIEDWKFVAMVLDRLFLWVFTLACT 494
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 20.6 bits (41), Expect = 7.3
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 178 ISNSVKMQIFIKTLTGKTITAETEPAET 261
+++++K + + L T+TAETE ++
Sbjct: 1 MASAIKALLIVCALFIYTVTAETEEGQS 28
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 20.6 bits (41), Expect = 7.3
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 178 ISNSVKMQIFIKTLTGKTITAETEPAET 261
+++++K + + L T+TAETE ++
Sbjct: 1 MASAIKALLIVCALFIYTVTAETEEGQS 28
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.2 bits (40), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 117 LLHNSTIGGGKGTFTATVVI 176
L++NS G GT+ +VV+
Sbjct: 74 LMYNSADEGFDGTYQTSVVV 93
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.2 bits (40), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 117 LLHNSTIGGGKGTFTATVVI 176
L++NS G GT+ +VV+
Sbjct: 74 LMYNSADEGFDGTYQTSVVV 93
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.2 bits (40), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 117 LLHNSTIGGGKGTFTATVVI 176
L++NS G GT+ +VV+
Sbjct: 74 LMYNSADEGFDGTYQTSVVV 93
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.2 bits (40), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 117 LLHNSTIGGGKGTFTATVVI 176
L++NS G GT+ +VV+
Sbjct: 74 LMYNSADEGFDGTYQTSVVV 93
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.2 bits (40), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 117 LLHNSTIGGGKGTFTATVVI 176
L++NS G GT+ +VV+
Sbjct: 74 LMYNSADEGFDGTYQTSVVV 93
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.2 bits (40), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 117 LLHNSTIGGGKGTFTATVVI 176
L++NS G GT+ +VV+
Sbjct: 74 LMYNSADEGFDGTYQTSVVV 93
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 20.2 bits (40), Expect = 9.6
Identities = 9/34 (26%), Positives = 13/34 (38%)
Frame = +1
Query: 34 RRPDNF*LRAWKSIAVEGK*FVVWVSAACCTIPP 135
+RP F L AW + F ++ PP
Sbjct: 156 KRPIRFILAAWLIALISAIPFAIYTKVNLVEYPP 189
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,228
Number of Sequences: 438
Number of extensions: 2932
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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