Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27k16
         (237 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily ass...    26   3.1  
U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily ass...    26   3.1  
U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily ass...    26   3.1  

>U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform c protein.
          Length = 485

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 74  VMLCTRXVINFCVXSIQXFXLI 9
           V+LCT  ++N CV S+  +  I
Sbjct: 74  VLLCTASILNLCVISLDRYFAI 95


>U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform b protein.
          Length = 592

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 74  VMLCTRXVINFCVXSIQXFXLI 9
           V+LCT  ++N CV S+  +  I
Sbjct: 181 VLLCTASILNLCVISLDRYFAI 202


>U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform a protein.
          Length = 564

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 74  VMLCTRXVINFCVXSIQXFXLI 9
           V+LCT  ++N CV S+  +  I
Sbjct: 153 VLLCTASILNLCVISLDRYFAI 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,375
Number of Sequences: 27780
Number of extensions: 20702
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)