Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27k16
         (237 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.17 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   0.67 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   0.89 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   1.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   1.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   1.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   2.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   2.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.17
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 74  VMLCTRXVINFCVXSIQXFXLI-KP 3
           V+ CT  ++N C+ S+  F  I KP
Sbjct: 122 VLSCTASILNLCMISVDRFCAITKP 146


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 0.67
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 36  NTKIYYXTSTQHYNH 80
           +++I+Y TS Q+Y H
Sbjct: 199 SSEIFYTTSQQYYGH 213


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 0.89
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -2

Query: 74  VMLCTRXVINFCVXSIQXFXLI 9
           V +CT  ++N C  S+  +  +
Sbjct: 146 VWMCTASILNLCAISLDRYLAV 167


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -2

Query: 74  VMLCTRXVINFCVXSIQXFXLI 9
           V+ CT  ++N C  ++  +  I
Sbjct: 117 VLCCTASILNLCAIALDRYWAI 138


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -2

Query: 74  VMLCTRXVINFCVXSIQXFXLI 9
           V+ CT  ++N C  ++  +  I
Sbjct: 117 VLCCTASILNLCAIALDRYWAI 138


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -2

Query: 74  VMLCTRXVINFCVXSIQXFXLI 9
           V+ CT  ++N C  ++  +  I
Sbjct: 117 VLCCTASILNLCAIALDRYWAI 138


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic
          acetylcholine receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 2.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 39 TKIYYXTSTQHYN 77
          TKI +  S QHYN
Sbjct: 60 TKIDFGLSIQHYN 72


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 2.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 29  LXKHKNLLXNEYTT 70
           L  H NLL N Y+T
Sbjct: 398 LASHNNLLNNVYST 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,682
Number of Sequences: 438
Number of extensions: 337
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)