Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27k10
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    48   6e-07
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    41   9e-05
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    37   0.002
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    36   0.003
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    31   0.13 
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    25   6.3  

>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 48.4 bits (110), Expect = 6e-07
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = -3

Query: 221  VNFSDLHFNYPTRPSVPVLRGLNLQLKAGRTVALVGASG 105
            + F  + F+YPTR  + VLRGLNL +K G+ VA VG+SG
Sbjct: 1119 IEFRQVEFSYPTRRHIKVLRGLNLTVKPGQFVAFVGSSG 1157



 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = -3

Query: 230 KGEVNFSDLHFNYPTRPSVPVLRGLNLQLKAGRTVALVGASG 105
           KGE+   ++ F YPTRP V VL   +L   +G+  ALVGASG
Sbjct: 417 KGEIELKNIRFVYPTRPEVLVLDNFSLVCPSGKITALVGASG 458


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 41.1 bits (92), Expect = 9e-05
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -3

Query: 227 GEVNFSDLHFNYPTRPSVPVLRGLNLQLKAGRTVALVGASG 105
           G + F ++HF+Y   P+ P+L G +  + AG  VA VGASG
Sbjct: 441 GSIQFDNVHFSY--NPNRPILNGCSFNIPAGAKVAFVGASG 479


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 230 KGEVNFSDLHFNYPTRPSVPVLRGLNLQLKAGRTVALVGASG 105
           K  ++F ++ F YPTRPS  +   L+  +  G  VA+V  SG
Sbjct: 479 KAILSFRNVGFAYPTRPSASIFDNLSFDIHPGTNVAIVAPSG 520


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -3

Query: 242 LQTAKGEVNFSDLHFNYPTRPSVPVLRGLNLQLKAGRTVALVGASG 105
           L+  +G+V FS + F Y   P  PVL  +N   + G+ +ALVG SG
Sbjct: 577 LKVTQGKVIFSHVSFAYD--PRKPVLSDINFVAQPGKVIALVGESG 620


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 221 VNFSDLHFNYPTRPSVPVLRGLNLQLKAGRTVALVGASG 105
           + F D+ FNYP  P+  +   LN  L     VALVG +G
Sbjct: 594 IKFQDVSFNYPGGPT--IFSKLNFGLDLKSRVALVGPNG 630


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -2

Query: 192 SNSAFSAGPARPEPSAQGRAHCGAG--RGQRIK 100
           S      GPA       GR H G+G  RG+RIK
Sbjct: 13  SKKRVGRGPASGLGKTSGRGHKGSGQRRGRRIK 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,629
Number of Sequences: 5004
Number of extensions: 33785
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)