Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27k07
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   4.6  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   4.6  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   4.6  
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    25   4.6  
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    25   4.6  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   6.1  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   8.0  

>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 249 VDSVNGTVAVTRNNVTPPEPPRVYAYDAVFDSNTSQPP 362
           + S  G  A T+N+      PRV++ ++ F S TS PP
Sbjct: 337 LSSEKGYSAHTQNSSAQSPHPRVFSANSAF-STTSPPP 373


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 339 DSNTSQPPENELQKNSDRVLSE 404
           D+N  +P +NEL KN +  +SE
Sbjct: 84  DANILEPLKNELVKNEESTMSE 105


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 339 DSNTSQPPENELQKNSDRVLSEHELR 416
           DS+   PP + + KNS  +  EH L+
Sbjct: 8   DSSRKSPPSDSVVKNSSPIDYEHSLK 33


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 290 IVPGHSHSPVHGIYGHAIVGAVHFLPLVHG 201
           I PGHS  P++ I  H     +  LP ++G
Sbjct: 17  IAPGHSRDPLNAIQEHMDSMILSKLPRING 46


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 342 SRRQHRKRKREAAPEASHCSWSQPQSR 262
           S++Q ++ K +AA EAS  SW Q  +R
Sbjct: 229 SQKQQKQLKPKAALEASQNSWKQFAAR 255


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 246 SVDSVNGTV--AVTRNNVTPPEPPRVYAYDAVFDSNTSQPPENELQKNSDRV 395
           SV+S + ++  ++T++N++  +   VY  + +  S + QP    +Q  SD+V
Sbjct: 225 SVNSNHSSIPSSITKSNISSLD---VYGSEKLISSGSQQPGHGMVQTTSDKV 273


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 280 PGTM*RLRSRLAFTLTMLSSTLTPVSLLKTNCRR-IRIACFRSTN 411
           P  + +L + L     + SST  P++L++  CR  + I   RSTN
Sbjct: 205 PAEVQKLNNSLVLIRVLCSSTHWPMTLVERLCRSCVLIVGQRSTN 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,594
Number of Sequences: 5004
Number of extensions: 35883
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)