Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27k07
(486 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520... 33 0.092
02_04_0138 - 20144653-20144685,20144992-20145081,20145405-201454... 32 0.28
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 31 0.37
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 31 0.49
07_01_0679 - 5114271-5114402,5115015-5115086,5115168-5115236,511... 30 0.86
03_04_0154 - 17749569-17749868 30 0.86
10_08_0566 + 18831063-18832586 30 1.1
04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979... 29 2.0
04_03_0584 + 17546945-17547382 29 2.0
02_04_0540 + 23748610-23748930,23749054-23749157,23749889-237500... 28 4.6
09_02_0459 + 9566824-9567303 27 6.0
08_02_1493 + 27512473-27512557,27512670-27513351,27513459-275135... 27 6.0
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980... 27 6.0
06_01_0611 + 4420873-4422207 27 6.0
02_03_0144 + 15694766-15694883,15694980-15697612 27 6.0
01_06_0723 + 31501900-31502808,31502846-31503295 27 6.0
01_06_0506 + 29887343-29887686,29889965-29890265,29890385-298906... 27 6.0
10_08_0533 + 18592177-18592581,18592674-18593906 27 8.0
08_01_0397 - 3509186-3510291,3510322-3512335 27 8.0
06_03_0722 - 23869981-23870250 27 8.0
04_04_1319 - 32615923-32615979,32616431-32616495,32616654-326167... 27 8.0
04_03_0096 + 11158108-11159083,11159116-11159744 27 8.0
02_05_0956 - 33064104-33066425 27 8.0
02_04_0069 - 19450322-19450348,19451247-19451319,19451535-194517... 27 8.0
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 27 8.0
01_01_0684 + 5255634-5256029,5256222-5256326 27 8.0
>03_06_0326 +
33150599-33150907,33151013-33151104,33151961-33152057,
33152585-33152656,33152750-33152812,33152905-33153045,
33153603-33153698,33154120-33154404,33154692-33154851,
33154947-33155089,33155688-33155861,33156386-33156652,
33156737-33156856
Length = 672
Score = 33.5 bits (73), Expect = 0.092
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -1
Query: 342 SRRQHRKRKREAAP----EASHCSWSQPQSRSRNLRTRNCRSRPFS 217
SRR+ R+R+R +P EAS S S +SRSRN R R P S
Sbjct: 11 SRRRRRRRQRSRSPSDSEEASDSSGSPRRSRSRNRRKSRRRDTPSS 56
>02_04_0138 -
20144653-20144685,20144992-20145081,20145405-20145489,
20146859-20146922,20149388-20149628
Length = 170
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +2
Query: 146 RRALGSDRRECSGGGSRAAHGPEGENGRLLQLRVRRFRERDCGCDQEQCD 295
RR G RR C GGG AA E ++ R RR R R G D + +
Sbjct: 28 RRRRGGGRRSCGGGGGAAAVEAERQSRYCGGGRQRRRRHRGSGGDAVEAE 77
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 31.5 bits (68), Expect = 0.37
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = -1
Query: 408 RAPKARDPNSSAIRFQEADWC*SRRQHRKRKREAAPEASHCSWSQPQSRSR 256
R P RDP+ S A W Q R ++P W++P RSR
Sbjct: 2172 RTPFQRDPHPSQQSMHSAGWGAHSVQQSDRGGSSSPGIGDIQWAKPTKRSR 2222
>01_06_1729 +
39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 31.1 bits (67), Expect = 0.49
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = -1
Query: 387 PNSSAIRFQEADWC*SRRQHRKRKREAAPEASHCSWSQPQSRSRNLRTRNCRS 229
P S +R + SR H RE APEAS C S +RN TRNC S
Sbjct: 372 PGLSTLRSTDQSNMNSRISHNLCSREEAPEASGC-----LSPNRNGDTRNCIS 419
>07_01_0679 -
5114271-5114402,5115015-5115086,5115168-5115236,
5115356-5115421,5115619-5115822,5116715-5116942
Length = 256
Score = 30.3 bits (65), Expect = 0.86
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 201 PMDQREKMDGSYNCVSVDSVNGTVAVTRNNVTPPEPPR 314
PM +K D DS N + A +N TPPEPP+
Sbjct: 86 PMKSSDKNDSLRTEAGTDSGNSSKAADKN-ATPPEPPK 122
>03_04_0154 - 17749569-17749868
Length = 99
Score = 30.3 bits (65), Expect = 0.86
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 167 RRECSGGGSRAAHGPEGENGRLLQLRVRRFRERDCG-CDQEQCDASGAA 310
R+E GGG A EG G + R RR R +CG C C+ G A
Sbjct: 44 RQEAEGGGGAGAGEVEGRGGERGRGRRRRRRRAECGTCG---CEGGGDA 89
>10_08_0566 + 18831063-18832586
Length = 507
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +2
Query: 116 RRFGVHKNARRRALGSDRRECSGGGSRAAHGPEGENGRL 232
R GVH +R G RE GG R G E E G L
Sbjct: 22 RLCGVHAGSRSGGEGPGARESGGGDVRIGRGEEEEEGGL 60
>04_03_0965 -
21296608-21297165,21297332-21297682,21297781-21297965,
21298076-21298172,21298859-21299071,21299206-21299334,
21299442-21299567,21301280-21301999
Length = 792
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +2
Query: 143 RRRALGSDRRECSGGGSRAAHGPEGENG------RLLQLRVRRFRERDCGC 277
RR A G R+ G G+RAA G +GE G RLL R RR R R C
Sbjct: 127 RRAAGGRHVRDDGGPGARAAGG-DGEQGALAARRRLLPGRRRRRRRRRLAC 176
>04_03_0584 + 17546945-17547382
Length = 145
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 134 KNARRRALGSDRRECSGGGSRA-AHGPEGENG 226
+NARRR L +++R GGG R A G +G G
Sbjct: 33 RNARRRGLRTNQRAGRGGGRRGDAEGGDGAAG 64
>02_04_0540 +
23748610-23748930,23749054-23749157,23749889-23750063,
23750149-23750212,23750867-23750946,23751128-23751287,
23751415-23751476,23751607-23751666,23751824-23751882,
23752194-23752275,23752691-23752740,23752847-23752980,
23753508-23753590,23754070-23754142,23754461-23754477
Length = 507
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/27 (37%), Positives = 22/27 (81%)
Frame = +3
Query: 363 ENELQKNSDRVLSEHELRVQRSLQKLK 443
+ EL++ +R++SE E ++QR+L++L+
Sbjct: 157 DRELEETIERLISECERKIQRALKRLE 183
>09_02_0459 + 9566824-9567303
Length = 159
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 152 ALGSDRRECSGGGS--RAAHGPEGENG 226
ALG RR GGGS R A G + +NG
Sbjct: 4 ALGGGRRRARGGGSRRREAEGGDDDNG 30
>08_02_1493 +
27512473-27512557,27512670-27513351,27513459-27513522,
27513734-27513961
Length = 352
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Frame = +2
Query: 179 SGGGSRAAHGPEGENGRLLQLRVRRFRER--------DCGCDQEQCDASGAA 310
S GGSR+ + P G +GR F + DCG Q +C +GA+
Sbjct: 69 SPGGSRSLYAPSGWSGRFWARSGCEFDDSGKGSCATGDCGSGQVECRGAGAS 120
>06_03_1274 +
28897491-28897707,28897804-28897935,28898029-28898096,
28898216-28898280,28898468-28898534,28898630-28898917,
28898995-28899102,28899236-28899487,28899918-28899997,
28900092-28900185,28900728-28900810,28901319-28901873,
28902085-28902616
Length = 846
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 266 PVHGI-YGHAIVGAVHFLPLVHGPHANH 186
P+ G+ GH +G VH +VH P A H
Sbjct: 130 PILGVCLGHQALGFVHGAKIVHAPEAIH 157
>06_01_0611 + 4420873-4422207
Length = 444
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/51 (39%), Positives = 21/51 (41%)
Frame = +2
Query: 146 RRALGSDRRECSGGGSRAAHGPEGENGRLLQLRVRRFRERDCGCDQEQCDA 298
RRA RR GGG P G+L QL F D G DQ DA
Sbjct: 55 RRARRRRRRVGDGGGGVGMGSPTAFQGQLQQL----FHLHDAGVDQTFIDA 101
>02_03_0144 + 15694766-15694883,15694980-15697612
Length = 916
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -2
Query: 269 SPVHGIYG--HAIVGAVHFLPLVHGPHANHHPNILDGRSRELCVG 141
S ++ I+G HA+V A + + +H H + P +LDG S +LC G
Sbjct: 424 SKINCIHGNEHAMV-ADNDIAEIHSEH-DKDPQLLDGESAKLCEG 466
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 225 DGSYNCVSVDSVNGTVAVTRNNVTPPEPPRVYAYDAVFDSNTSQPP 362
DG N + + G VAV ++ + PR+YA + D++ QPP
Sbjct: 189 DGKLNLCVCNPMTGDVAVLPP-LSGKDRPRMYACTLLTDADIDQPP 233
>01_06_0506 +
29887343-29887686,29889965-29890265,29890385-29890677,
29890783-29891069,29891171-29891400
Length = 484
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/74 (28%), Positives = 26/74 (35%)
Frame = +2
Query: 140 ARRRALGSDRRECSGGGSRAAHGPEGENGRLLQLRVRRFRERDCGCDQEQCDASGAASXX 319
A R A +CSG G+ G GE+GR R F DC C A +
Sbjct: 59 AAREAEAVAAADCSGHGNVFLDGVTGEDGRPGCECNRCFSGPDCSVRTPNCTADADSGNP 118
Query: 320 XXXXXXXXXHQSAS 361
H +AS
Sbjct: 119 LFLEPYWRRHAAAS 132
>10_08_0533 + 18592177-18592581,18592674-18593906
Length = 545
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 297 PPEPPRVYAYDAVFDSNTSQPPENELQKNS 386
PP PPR D+V D T+ P + Q+ S
Sbjct: 33 PPPPPRQPQEDSVDDEETASPSPGKPQEGS 62
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 336 RQHRKRKREAAPEASHCSWSQPQSRSRNLRTRNCRSRPFSPSGP 205
R+ R R+REAA E + + R R + R P GP
Sbjct: 96 REERSRRREAAAEEEEEDVDRDRKRRRRSSHHHHHHRDAEPEGP 139
>06_03_0722 - 23869981-23870250
Length = 89
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 143 RRRALGSDRRECSGGGSRAAHGPEGENGRL-LQLRVRRFRERD 268
RR+ G RR +G SR + P+G G L L RR R RD
Sbjct: 38 RRKRRGPRRRSTTGTSSRPSSTPKGCGGVLRLPPPGRRARRRD 80
>04_04_1319 -
32615923-32615979,32616431-32616495,32616654-32616732,
32616817-32616946,32617478-32617550,32617634-32617688,
32617800-32617846,32619232-32619421
Length = 231
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 119 RFGVHKNARRRALGSDRREC 178
RF V K A+ LGSDRR C
Sbjct: 31 RFAVEKFAQPLVLGSDRRSC 50
>04_03_0096 + 11158108-11159083,11159116-11159744
Length = 534
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 463 SYTIQVHFSFCSDRCTLNSCSES--TRSEFFCNS 368
SYT+ +H S CT++ CSE T E F +S
Sbjct: 294 SYTLSMHGSLAITSCTVDFCSEELITSEEEFDSS 327
>02_05_0956 - 33064104-33066425
Length = 773
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = -2
Query: 290 IVPGHSHSPVHGI---YGHAIVGAVHFLPLVHGPHANHHPNIL 171
I+P H P + Y HA G L H HHP+IL
Sbjct: 69 ILPSHLSEPTPRLVYAYSHAATGFAAKLAKHQATHIVHHPSIL 111
>02_04_0069 -
19450322-19450348,19451247-19451319,19451535-19451790,
19451808-19452057
Length = 201
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 336 RQHRKRKREAAPEASHCSWSQPQSRSRNLRTRNCRS 229
R+HR+R A W++ Q ++ +RTR+C S
Sbjct: 138 RRHRRRVTRMRTIAGASCWAKGQVVAQAMRTRSCGS 173
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 306 PPRVYAYDAVFDSNTSQPPENELQKNSD 389
PP+V DA D NT++ +N+++++ D
Sbjct: 227 PPQVPEDDAKIDENTAEELQNQMERDYD 254
>01_01_0684 + 5255634-5256029,5256222-5256326
Length = 166
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 143 RRRALGSDRRECSGGGSRAAHGPEGENGRLLQLRVRRFR 259
RR+ + RR+ G G A G EG+ LQL RR R
Sbjct: 60 RRKRRKARRRQRKGAGDDDAAGGEGDEALQLQLLRRRPR 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,375,547
Number of Sequences: 37544
Number of extensions: 284238
Number of successful extensions: 1322
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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