Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27k07
(486 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF149288-1|AAF99087.1| 644|Caenorhabditis elegans KRP85 protein. 34 0.063
AC024801-1|AAK68513.1| 646|Caenorhabditis elegans Kinesin-like ... 34 0.063
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 31 0.59
AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical ... 29 1.4
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical pr... 29 2.4
U70845-2|AAB09100.1| 102|Caenorhabditis elegans Hypothetical pr... 29 2.4
U55374-4|AAB36866.2| 589|Caenorhabditis elegans Immunoglobulin-... 28 3.1
U55374-3|ABS19462.1| 591|Caenorhabditis elegans Immunoglobulin-... 28 3.1
U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical pr... 28 3.1
AC024796-9|AAK29893.2| 454|Caenorhabditis elegans Hypothetical ... 28 3.1
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 28 4.1
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 28 4.1
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 28 4.1
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 27 5.5
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 27 5.5
AY079165-1|AAL86012.1| 585|Caenorhabditis elegans NADPH-depende... 27 5.5
AL132858-12|CAB60480.1| 585|Caenorhabditis elegans Hypothetical... 27 5.5
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 27 5.5
Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z75544-2|CAC42316.1| 480|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z75544-1|CAA99881.1| 476|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z22181-9|CAA80186.1| 453|Caenorhabditis elegans Hypothetical pr... 27 7.2
U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved olig... 27 7.2
U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein. 27 7.2
Z81470-7|CAB03885.1| 129|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen prot... 27 9.5
>AF149288-1|AAF99087.1| 644|Caenorhabditis elegans KRP85 protein.
Length = 644
Score = 33.9 bits (74), Expect = 0.063
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 201 PMDQREKMDGSYNCVSVDSVNGTVAVTRNNVTPPEPPRVYAYDAVFDSNTSQ 356
P+ EK+ G + ++V + AV +++ +PPR + +DAVF NT Q
Sbjct: 13 PISTTEKLQG--HKIAVTCNDEEKAVNIKSLSQEDPPRTFYFDAVFSPNTDQ 62
>AC024801-1|AAK68513.1| 646|Caenorhabditis elegans Kinesin-like
protein protein 20 protein.
Length = 646
Score = 33.9 bits (74), Expect = 0.063
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 201 PMDQREKMDGSYNCVSVDSVNGTVAVTRNNVTPPEPPRVYAYDAVFDSNTSQ 356
P+ EK+ G + ++V + AV +++ +PPR + +DAVF NT Q
Sbjct: 15 PISTTEKLQG--HKIAVTCNDEEKAVNIKSLSQEDPPRTFYFDAVFSPNTDQ 64
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 30.7 bits (66), Expect = 0.59
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -2
Query: 293 HIVPGHSH-SPVHGIYGHAIVGAVHFLPLVHGPHANHH 183
H GH H SP H +GH G H P HG H HH
Sbjct: 442 HESHGHGHHSPAH--HGHH--GEHHHAPAHHGHHGEHH 475
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 293 HIVPGHSHSPVHGIYGHAIVGAVHFLPLVHGPHANHH 183
H H H HG + H G+ H P HG H HH
Sbjct: 476 HAPAHHGHHGEHGTH-HGHHGS-HHSPAHHGHHGEHH 510
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 293 HIVPGHSHSPVHGIYGHAIVGAVHFLPLVHGPHANHH 183
H H H HG + H G+ H P HG H HH
Sbjct: 534 HAPAHHGHHGEHGTH-HGHHGS-HHSPAHHGHHGEHH 568
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -2
Query: 293 HIVPGHSHSPVHGIYGHAIVGAVHFLPLVHGPHANHH 183
H P H H HG + H G VH HG H HH
Sbjct: 632 HHAPHHEHHEHHGDHHHGSHG-VH-----HGHHGTHH 662
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 278 HSHSPVHGIYGHAIVGAVHFLPLVHGPHANH 186
H H+P H +GH G H P HG H H
Sbjct: 461 HHHAPAH--HGHH--GEHHHAPAHHGHHGEH 487
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -2
Query: 293 HIVPGHSHSPVHGIYGHAIVGAVHFLPLVHGPHANHH 183
H + H H HG GH H P HG H HH
Sbjct: 662 HSLAHHGH---HG--GHGTHHGAHHSPAHHGHHGAHH 693
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -2
Query: 281 GHSHSPVHGIYGHAIVGAVHFLPLVHGPHANHH 183
G HSP H +GH GA H HG H HH
Sbjct: 678 GAHHSPAH--HGHH--GAHHEHGAHHGAHHGHH 706
>AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical
protein F56A11.6 protein.
Length = 442
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/66 (30%), Positives = 26/66 (39%)
Frame = -1
Query: 408 RAPKARDPNSSAIRFQEADWC*SRRQHRKRKREAAPEASHCSWSQPQSRSRNLRTRNCRS 229
R + RD + R D SRR R E S +P+SR +TR+
Sbjct: 374 REDRDRDRDRDRSRKDRDDKSCSRRSRDDRSEERKDRKSRDDRERPRSRQDKSKTRSVED 433
Query: 228 RPFSPS 211
RP S S
Sbjct: 434 RPRSRS 439
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 115 SALRSPQKCPTQSSRLRPSRMFGWWFACGPWTR 213
S +R P CP Q + L P + G + C P+ R
Sbjct: 856 SDVRLPNVCPPQPANLVPVELAGNYRTCNPYAR 888
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 276 VTRNNVTPPEPPRVYAYDAVFDSNTSQPPENELQKNS 386
V R PP PP + +D+ TS+ E E++K S
Sbjct: 244 VMRQKGAPPPPPPEFGFDSDKQKVTSEDIEKEIKKGS 280
>Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical
protein R03D7.2 protein.
Length = 542
Score = 28.7 bits (61), Expect = 2.4
Identities = 19/69 (27%), Positives = 27/69 (39%)
Frame = -1
Query: 423 AVPSIRAPKARDPNSSAIRFQEADWC*SRRQHRKRKREAAPEASHCSWSQPQSRSRNLRT 244
A P R+P R P+ S R + S +R+R + + W Q Q R R +
Sbjct: 15 AAPRSRSPHRRQPHHS--RSSSNNISSSLHSRLRRRRRSRSQRKQLQWQQQQLRLRKEQQ 72
Query: 243 RNCRSRPFS 217
R R S
Sbjct: 73 NQSRRRTSS 81
>U70845-2|AAB09100.1| 102|Caenorhabditis elegans Hypothetical
protein F22H10.2 protein.
Length = 102
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 278 HSHSPVHGIYGHAIVGAVHFLPLVHGPHANHH 183
H H +HG+ GHA+ G H G H HH
Sbjct: 65 HHHGLLHGL-GHALTGGHHHHHHHGGHHFGHH 95
>U55374-4|AAB36866.2| 589|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform a protein.
Length = 589
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 356 LTGVRVEDSIVSVNARRLRRRHIVPGHSHSPV 261
L G V+ S +V+ R LR+ H+V + SPV
Sbjct: 126 LNGGTVDSSPATVDVRYLRQPHVVDSNGQSPV 157
>U55374-3|ABS19462.1| 591|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform b protein.
Length = 591
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 356 LTGVRVEDSIVSVNARRLRRRHIVPGHSHSPV 261
L G V+ S +V+ R LR+ H+V + SPV
Sbjct: 126 LNGGTVDSSPATVDVRYLRQPHVVDSNGQSPV 157
>U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical
protein SSSD1.1 protein.
Length = 636
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 279 TRNNVTPPEPPRVYAYDAVFD-SNTSQPPENELQKNSDRVLSEHELRVQRSLQ 434
+R+N TP + + Y D S++SQP + S R+L +HE R R L+
Sbjct: 524 SRSNSTPSKTYQDYGRFTYGDGSSSSQPGTETYYEPSLRLLDDHEWRGPRDLE 576
>AC024796-9|AAK29893.2| 454|Caenorhabditis elegans Hypothetical
protein Y48G1C.1 protein.
Length = 454
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 297 PPEPPRVYAYDAVFDSNTSQ-PPENELQKNSDRVLSEHELRVQRSL 431
PPEPPR+ + +N + PP E++ S + EH + R +
Sbjct: 18 PPEPPRIILREVPVQNNQKEHPPVQEIKTVSSK-SKEHRVSSSRKI 62
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -1
Query: 414 SIRAPKARDPNSSAIRFQEADWC*SRRQHRKRKREAAPEASHCSWSQPQSRSRNLRTR 241
+IR + + A+ F+E D S RQ RKR + +S S+P S +++++R
Sbjct: 189 NIRNDQGETNANLALNFEEPDP--SERQERKRSTASPRPSSRGPGSRPSSPKKSMKSR 244
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -1
Query: 414 SIRAPKARDPNSSAIRFQEADWC*SRRQHRKRKREAAPEASHCSWSQPQSRSRNLRTR 241
+IR + + A+ F+E D S RQ RKR + +S S+P S +++++R
Sbjct: 189 NIRNDQGETNANLALNFEEPDP--SERQERKRSTASPRPSSRGPGSRPSSPKKSMKSR 244
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -1
Query: 414 SIRAPKARDPNSSAIRFQEADWC*SRRQHRKRKREAAPEASHCSWSQPQSRSRNLRTR 241
+IR + + A+ F+E D S RQ RKR + +S S+P S +++++R
Sbjct: 189 NIRNDQGETNANLALNFEEPDP--SERQERKRSTASPRPSSRGPGSRPSSPKKSMKSR 244
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -1
Query: 414 SIRAPKARDPNSSAIRFQEADWC*SRRQHRKRKREAAPEASHCSWSQPQSRSRNLRTR 241
+IR + + A+ F+E D S RQ RKR + +S S+P S +++++R
Sbjct: 189 NIRNDQGETNANLALNFEEPDP--SERQERKRSTASPRPSSRGPGSRPSSPKKSMKSR 244
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 336 RQHRKRKREAAPEASHCSWSQPQSRSRNLRTRNCRSRPFSP 214
R RKR+R +P+ +P+ RSR+ R R RP SP
Sbjct: 149 RVERKRRRSPSPKRRRRPSEKPRKRSRSPR----RERPRSP 185
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 336 RQHRKRKREAAPEASHCSWSQPQSRSRNLRTRNCRSRPFSP 214
R RKR+R +P+ +P+ RSR+ R R RP SP
Sbjct: 149 RVERKRRRSPSPKRRRRPSEKPRKRSRSPR----RERPRSP 185
>AY079165-1|AAL86012.1| 585|Caenorhabditis elegans NADPH-dependent
flavin reductase protein.
Length = 585
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = -2
Query: 290 IVPGHSHSPVHGIYGHAIVGAVHFLP-LVHGPHANHHPNILDGRSRELCVGHFCGLRSAD 114
I PG +P ++GH + + HF L G + HH EL S D
Sbjct: 456 IGPGTGVAPFRSLFGHRSLFSAHFPGILFFGCRSEHHDYYFSDEWPELSGVAVIPAFSRD 515
Query: 113 TDSR 102
TD R
Sbjct: 516 TDGR 519
>AL132858-12|CAB60480.1| 585|Caenorhabditis elegans Hypothetical
protein Y113G7A.8 protein.
Length = 585
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = -2
Query: 290 IVPGHSHSPVHGIYGHAIVGAVHFLP-LVHGPHANHHPNILDGRSRELCVGHFCGLRSAD 114
I PG +P ++GH + + HF L G + HH EL S D
Sbjct: 456 IGPGTGVAPFRSLFGHRSLFSAHFPGILFFGCRSEHHDYYFSDEWPELSGVAVIPAFSRD 515
Query: 113 TDSR 102
TD R
Sbjct: 516 TDGR 519
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +3
Query: 261 NGTVAVTRNNVTPPEPPRVYAYDAVFDSNTSQPPENELQKNSDRVLSEHELR 416
N V+ N++ RV D+ D++ +QPP N+ + N + S ++ +
Sbjct: 239 NNDVSSRENHIQGSGNERVQGGDSWRDTSFNQPPRNDFKGNYNNAYSSNKYK 290
>Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical
protein DY3.7 protein.
Length = 922
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 336 RQHRKRKREAAPEASHCSWSQPQSRSRNLRTRNCRS-RPFSP 214
RQHR+R R AA +QP+S + + +R S RP +P
Sbjct: 796 RQHRQRHRAAAGSVPPGPGAQPRSGAASAPSRTTPSARPSAP 837
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 27.1 bits (57), Expect = 7.2
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +3
Query: 207 DQREKMDGSY-NCVSVDSVNGTVAVTRNNVTPPEPPRVYAYDAVFDSNTSQPPENELQKN 383
D R + D + + V +N +V + R+N + R+Y D + + E+++
Sbjct: 52 DLRSERDALHESLVDKAGLNESVIIERSNKVSTQETRIYRRDVTLLEDDLKQKESQI--- 108
Query: 384 SDRVLSEHELRVQRSLQKLKCT 449
R+L LR++ QK++ T
Sbjct: 109 --RILQNRCLRLETEKQKMQDT 128
>Z75544-2|CAC42316.1| 480|Caenorhabditis elegans Hypothetical
protein K02A11.1b protein.
Length = 480
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 342 SRRQHRKRKREAAPEASHCSWSQPQSRSRNLRTRNCRSR 226
SRRQ +KRK+ +P+ + P S +R ++ R R
Sbjct: 320 SRRQSKKRKKFESPQQGATTGDNPFSARGAIRRQSLRDR 358
>Z75544-1|CAA99881.1| 476|Caenorhabditis elegans Hypothetical
protein K02A11.1a protein.
Length = 476
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 342 SRRQHRKRKREAAPEASHCSWSQPQSRSRNLRTRNCRSR 226
SRRQ +KRK+ +P+ + P S +R ++ R R
Sbjct: 320 SRRQSKKRKKFESPQQGATTGDNPFSARGAIRRQSLRDR 358
>Z22181-9|CAA80186.1| 453|Caenorhabditis elegans Hypothetical
protein ZK632.11 protein.
Length = 453
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 325 TMLSSTLTPVSLLKTNCRRIRIACF 399
T+L S TPV++ K N R +I+CF
Sbjct: 88 TLLGSVSTPVTVKKENNIRKKISCF 112
>U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 5 protein.
Length = 580
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = -1
Query: 414 SIRAPKARDPNSSAIRFQEADWC*SRRQHRKRKREAAPEASHCSWSQPQSRSRNLRTRNC 235
SI++ R N ++ ++ D +++ RKRKR P S + + ++RN
Sbjct: 437 SIQSRLTRIENKDQVKDEKKD---EKKEDRKRKRSETPPFSRGAGFMDEKKARNEERERR 493
Query: 234 RSRPFS 217
R P S
Sbjct: 494 REGPRS 499
>U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical
protein F53A9.2 protein.
Length = 83
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 278 HSHSPVHGIYGHAIVGAVHFLPLVHGPHANHH 183
H HS +H + GHA+ G H HG H HH
Sbjct: 48 HHHSFLHEL-GHALTGHHHH---HHGHHFGHH 75
>AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein.
Length = 922
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 336 RQHRKRKREAAPEASHCSWSQPQSRSRNLRTRNCRS-RPFSP 214
RQHR+R R AA +QP+S + + +R S RP +P
Sbjct: 796 RQHRQRHRAAAGSVPPGPGAQPRSGAASAPSRTTPSARPSAP 837
>Z81470-7|CAB03885.1| 129|Caenorhabditis elegans Hypothetical
protein C14A6.8 protein.
Length = 129
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 201 PMDQREKMDGS-YNCVSVDSVNGTVAVTRNNVTPPEPPRVYAYDAVFDSN 347
P + K DG+ Y +++ N AV N PP PP A DA+ N
Sbjct: 8 PTNNLLKSDGNEYQNLAILDPNAP-AVGGNEPPPPPPPLTVAQDALISDN 56
>AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen protein
105 protein.
Length = 290
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 146 RRALGS--DRRECSGGGSRAAHGPEGENGR 229
R+A GS D EC G + A GP GE GR
Sbjct: 75 RQAYGSLLDTDECDGCCIQGAPGPTGEPGR 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,923,649
Number of Sequences: 27780
Number of extensions: 219404
Number of successful extensions: 878
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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