Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27k07
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.43 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   0.99 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   5.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 233 GAVHFLPLVHGPHANHHPNILDGRSRELCVGH 138
           G V+ L   H  HANHH  +  G S  LC  H
Sbjct: 271 GGVYHLDNHHVHHANHHAIL--GHSGFLCERH 300


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 239 IVGAVHFLPLVHGPHANHHPNILDGRSRE 153
           + G + F+P+  G H  + P +LD    E
Sbjct: 152 LAGLISFVPISLGLHRANEPVVLDDSKEE 180


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 276 VTRNNVTPPEPPRVYAYDA 332
           V R+NVTP  P R +  D+
Sbjct: 906 VARSNVTPRSPGRAWPGDS 924


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 306 APEASHCSWSQPQSRSRNLRTRNC 235
           A +A+H S S+    S  LRT  C
Sbjct: 605 AEQAAHASASEESVHSMELRTLPC 628


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 306 APEASHCSWSQPQSRSRNLRTRNC 235
           A +A+H S S+    S  LRT  C
Sbjct: 573 AEQAAHASASEESVHSMELRTLPC 596


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 142 GIFVDSEAPTQILETQIKI*LRFSFCLRYNAKN 44
           G+F+   A    L ++ K  +R  F L YNAK+
Sbjct: 88  GMFLSRNAIFTPLNSEQKYEVRMLFELLYNAKD 120


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 142 GIFVDSEAPTQILETQIKI*LRFSFCLRYNAKN 44
           G+F+   A    L ++ K  +R  F L YNAK+
Sbjct: 88  GMFLSRNAIFTPLNSEQKYEVRMLFELLYNAKD 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,819
Number of Sequences: 438
Number of extensions: 2805
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)