Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27k05
(347 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 30 0.43
05_04_0343 - 20437780-20438009,20438576-20438666 29 1.0
11_06_0351 - 22577666-22577989,22578282-22578676,22578961-225793... 29 1.3
01_05_0769 - 25042022-25042447,25042856-25043234,25043714-250437... 29 1.3
11_06_0691 - 26315738-26315848,26315939-26316163,26316249-263166... 28 1.8
02_05_0979 + 33268294-33269595 28 1.8
07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188 27 3.1
07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948 27 3.1
08_02_0604 - 19215017-19215101,19215870-19216021,19216591-192166... 27 4.0
04_04_0111 - 22842337-22842648,22843008-22843402,22843732-228440... 27 4.0
04_03_0060 - 10511421-10512494 27 4.0
12_02_0037 - 12613686-12614318,12614792-12614878,12614985-126151... 27 5.3
07_01_1132 + 10531922-10532136,10532307-10532433,10532945-105331... 27 5.3
06_01_0351 + 2537022-2538281 27 5.3
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 27 5.3
03_05_0348 - 23346182-23348022,23348118-23348148 27 5.3
04_04_1122 + 31052497-31052629,31053133-31053191,31053285-310535... 26 7.1
04_03_0755 + 19310648-19311603,19312420-19312633 26 7.1
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 26 7.1
01_05_0275 - 20300994-20301150,20301582-20301670,20302779-203029... 26 7.1
09_03_0007 - 11430123-11430513,11430605-11430794,11431114-114311... 26 9.3
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 26 9.3
04_04_0475 + 25500470-25500609,25500697-25500794,25502806-255029... 26 9.3
04_03_1035 - 21887562-21890030 26 9.3
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 30.3 bits (65), Expect = 0.43
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 144 LWRSEHFSLLGGKKGRFPHRTELKARIGEDSSRT 245
LW EHF L G + PHR + IG DS+ T
Sbjct: 67 LWSIEHFGLRTGLRRPLPHRHLRVSDIGIDSTST 100
>05_04_0343 - 20437780-20438009,20438576-20438666
Length = 106
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 77 KNSNSQGSNTSAANAIALGAMTVVAVGTFLFTWWQEREVPPPH 205
K + S+G + LG VV + FLF +WQ+++ H
Sbjct: 43 KKAQSKGHTGRTVLIVLLGIGAVVLLSFFLFKYWQKKKREEQH 85
>11_06_0351 -
22577666-22577989,22578282-22578676,22578961-22579308,
22579449-22579583,22579664-22579731,22579804-22579869,
22579970-22580041,22580143-22580286,22580392-22580463,
22580805-22580872
Length = 563
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = +2
Query: 2 VPCKVFHXNHCRFSLPQINC--HFAMTK--NSNSQGSNTSAANAIAL--GAMTV-VAVGT 160
+P ++ +H + +NC H + N N+ GSN S +A GA+T+ V +
Sbjct: 130 IPKRLLQVSHYSYIGNHLNCGQHLISCEGNNINTGGSNNSKLKVVASIGGAVTLLVIIVL 189
Query: 161 FLFTWWQEREVPP 199
FL WWQ P
Sbjct: 190 FLL-WWQRMRHRP 201
>01_05_0769 -
25042022-25042447,25042856-25043234,25043714-25043763,
25044222-25044442,25045085-25045385
Length = 458
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 107 SAANAIALGAMTVVAVGTFLFTWWQEREVPPPHGAQG 217
+AA A A+ A+ +AV T + WW R + AQG
Sbjct: 14 AAAAAAAVAALLWLAVSTLEWAWWTPRRLERALRAQG 50
>11_06_0691 -
26315738-26315848,26315939-26316163,26316249-26316602,
26316681-26316795,26316882-26316925,26317026-26317122,
26317243-26317406,26317499-26317726,26317903-26318222,
26320028-26320136
Length = 588
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 207 PCGGGTSLSCHQVKRNVPTATTVIAPSAIALAADVLLPCELEFLVIA 67
P GGG SL C+Q+ + TV+ ++L D ++ +F + A
Sbjct: 209 PTGGGKSL-CYQLPATLHPGVTVVVCPLLSLIEDQIVALNFKFAIPA 254
>02_05_0979 + 33268294-33269595
Length = 433
Score = 28.3 bits (60), Expect = 1.8
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -2
Query: 202 RWGNLPFLPPSKEKCSDRHNRHRA*CYSISSGCVAALRIRILGHRKMAIYLWQRKTTMI 26
+W +L PP +E + RH H S C + ++I GH YLW T I
Sbjct: 94 QWQHLIPRPPVEEIMTARHLPHGTIFPLASKSCHGLVLLKITGHH--THYLWNPSTRHI 150
>07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188
Length = 736
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 165 RNVPTATTVIAPSAIALAADVLLPCELEF 79
R P+ TV +P + A+ +LP E+EF
Sbjct: 591 RTTPSRATVQSPFFLVYGAEAMLPSEVEF 619
>07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948
Length = 712
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 211 SSVRWGNLPFLPPSKEKCSDRHNRHRA*CYSI 116
S +RW FLPPS + SD H + RA +++
Sbjct: 498 SRLRWACDRFLPPSTQLQSDTHWKTRAHTHTV 529
>08_02_0604 -
19215017-19215101,19215870-19216021,19216591-19216614,
19216656-19216884,19217061-19217177,19219249-19219311,
19219887-19220125
Length = 302
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 116 NAIALGAM---TVVAVGTFLFTWWQEREVP 196
N I +G++ +V VG +LF W + RE+P
Sbjct: 269 NDITIGSLLGTALVIVGLYLFLWAKAREIP 298
>04_04_0111 -
22842337-22842648,22843008-22843402,22843732-22844073,
22844154-22844282,22844402-22844514,22844596-22844667,
22844783-22844859,22844978-22845052,22845058-22845121,
22845332-22845403,22845496-22845628,22846859-22846961
Length = 628
Score = 27.1 bits (57), Expect = 4.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 89 SQG-SNTSA-ANAIALGAMTVVAVGTFLFTWWQEREVPPPH 205
SQG S T A A +A A + AV F WW+ R+ P H
Sbjct: 235 SQGDSKTGAIAGGVAAAAALLFAVPAIGFAWWRRRK-PEEH 274
>04_03_0060 - 10511421-10512494
Length = 357
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 121 YSTRRDDGCGGRNISLYLVARKGGSPTARSSRRESAKIVAE 243
YS+RR DG GG ++ R + TA RR+ + VAE
Sbjct: 98 YSSRRSDGFGGLVVA---ERRHRWASTAAERRRQRVRAVAE 135
>12_02_0037 -
12613686-12614318,12614792-12614878,12614985-12615176,
12617246-12617371,12617479-12617565,12617994-12618458,
12618868-12618947,12619739-12619751
Length = 560
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 263 YFSAALCSATIFADSRLELRAVGEPPFL 180
YF A LC T+ +S + + AV P FL
Sbjct: 404 YFVATLCMCTLLVESMMMIIAVIVPDFL 431
>07_01_1132 +
10531922-10532136,10532307-10532433,10532945-10533100,
10533755-10533847,10534010-10534090,10534205-10534276,
10534608-10534676,10534764-10534874,10535039-10535089
Length = 324
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 124 STRRDDGCGGRNISLYLVARKGGSPTARSSRRESAKIVAEHSAAEK 261
S RR G G + + AR+GG AR+ RR + + E+
Sbjct: 13 SARRSRGAGREALRQRMEARRGGLAGARAGRRGGRRPRGQRGGGEE 58
>06_01_0351 + 2537022-2538281
Length = 419
Score = 26.6 bits (56), Expect = 5.3
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -2
Query: 238 LLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHRA-*CYSISSGCVAALRI-RILGH 71
L++S R L RW NLP + PS R R +SSGC +++ ++GH
Sbjct: 282 LVASNDRLLMVRRWINLPPIYPSDSGIVKRTRRFEVFEAADLSSGCGRWIKVDTLMGH 339
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 5 PCKVFHXNHCRFSLPQINCHFAMTKNSN---SQGSNTSAANAI 124
PCK + + LPQ++C + + S+ S S+ANA+
Sbjct: 1569 PCKQLESENGSYCLPQVDCQIEPCYSESVVLSEASTMSSANAM 1611
>03_05_0348 - 23346182-23348022,23348118-23348148
Length = 623
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 38 FSLPQINCHFAMTKNSNSQGSNTSAANAIALGAMTVVA 151
FSL Q + A+ + ++ T+ +AIALG VVA
Sbjct: 161 FSLAQPRAYVALNDPAAAEADITALVDAIALGLFCVVA 198
>04_04_1122 +
31052497-31052629,31053133-31053191,31053285-31053579,
31054099-31054279,31054739-31054956,31055522-31055739,
31055842-31055958,31056106-31056128,31056223-31056438,
31056536-31056677,31056822-31057067,31057659-31057856,
31058331-31058379,31060835-31060911,31061266-31061551,
31061661-31061841,31062149-31062344,31062630-31062738,
31062861-31062961,31063155-31063267,31063347-31063442,
31063531-31063746,31063857-31063995,31064087-31064332,
31064605-31064940
Length = 1396
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 133 RDDGCGGRNISLYLVARKGGSPTARSSRRESAK 231
R+DG G N LV + GGS + +RRE K
Sbjct: 617 REDGEGKVNSVSLLVIQSGGSVSIEEARREIMK 649
>04_03_0755 + 19310648-19311603,19312420-19312633
Length = 389
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 339 LMIYNIILLDSKHQRVHVSIILR 271
LM+ N++L D + Q HVS ++R
Sbjct: 355 LMVENLLLADEQRQSEHVSALVR 377
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 241 LLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHN 143
L SSP+ + S + G LPFL P KC + N
Sbjct: 108 LYTSSPMNSGSCRKTGYLPFL-PQPPKCEQQQN 139
>01_05_0275 -
20300994-20301150,20301582-20301670,20302779-20302937,
20303015-20303255,20303453-20303569,20304804-20304866,
20305009-20305118,20306418-20306495
Length = 337
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 118 CYSTRRDDGCGGRNISLYLVARKGGSPTARS 210
C++ R DGCG SL R+GG +RS
Sbjct: 256 CHNKRSADGCGPVYCSLGEEDRRGGYQQSRS 286
>09_03_0007 -
11430123-11430513,11430605-11430794,11431114-11431182,
11431601-11431727,11431843-11432083,11432519-11432596,
11433004-11433109,11433560-11433625,11437021-11437043,
11438106-11438177,11438256-11438394,11439505-11439919
Length = 638
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 62 HFAMTKNSNSQGSNTSAANAIALGAMTVVAVGTFLFTWWQER 187
+ + T + + S +AI A+TVV GT L W++R
Sbjct: 4 NLSTTSDIQEESSLFGVPSAILQKAVTVVGNGTMLNVTWEDR 45
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 25.8 bits (54), Expect = 9.3
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = -3
Query: 249 TMFCYYLRRFAP*APCGGGTSLSCHQVKRNVP-TATTVIAPSAIALAADVLLP 94
T FC LR F+P +P + +RNVP AL V LP
Sbjct: 316 TSFCGCLRGFSPTSPAAWAMKDASGGCRRNVPLRCGNTTTTDGFALVQGVKLP 368
>04_04_0475 +
25500470-25500609,25500697-25500794,25502806-25502915,
25502998-25503293,25503399-25503474,25503577-25503688,
25503955-25504004,25504090-25504392,25504446-25504547,
25505463-25505635,25505745-25505917,25505997-25506106,
25506180-25506329,25506726-25506881,25507000-25507116,
25507277-25507474,25507809-25507952
Length = 835
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = +2
Query: 65 FAMTKNSNSQGSNTSAANAIALGAMTVVAVGTFLFTWW 178
+ + +N + + A ++ + + A G FLF WW
Sbjct: 55 YLLKRNLQATAKSFMAEGKVSADPVAIDAPGGFLFEWW 92
>04_03_1035 - 21887562-21890030
Length = 822
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 110 AANAIALG-AMTVVAVGTFLFTWWQEREVPPPHGAQG 217
A + +A+G A+T V G + + W E E PP G
Sbjct: 248 AVSTVAVGDAVTCVLWGNWTVSCWPEGEASPPPALAG 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,874,973
Number of Sequences: 37544
Number of extensions: 194401
Number of successful extensions: 536
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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