Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27k05
(347 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93494-1|AAB51726.1| 123|Homo sapiens Lambda-V immunoglobulin l... 29 5.3
U54559-1|AAD03465.1| 352|Homo sapiens translation initiation fa... 29 5.3
CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein. 29 5.3
BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation ... 29 5.3
BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein. 29 5.3
BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation ... 29 5.3
AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation ... 29 5.3
AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation ... 29 5.3
AK095548-1|BAC04570.1| 153|Homo sapiens protein ( Homo sapiens ... 28 7.0
AK222520-1|BAD96240.1| 352|Homo sapiens eukaryotic translation ... 28 9.3
AJ431212-1|CAD24050.1| 77|Homo sapiens truncated steroid 21-hy... 28 9.3
>U93494-1|AAB51726.1| 123|Homo sapiens Lambda-V immunoglobulin
light chain variable domain precursor protein.
Length = 123
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +2
Query: 5 PCKVFHXNHCRFSLPQINCHFAMTKNSNSQGSNTSAANAIALGAMTVVAVGTFLFTWWQE 184
P + +HC SL Q A+ +S ++ A+ ++ + + VGT+ W+Q+
Sbjct: 5 PLLLLFLSHCTGSLSQ-----AVLTQPSSLSASPGASASLTCTLRSGINVGTYRIYWYQQ 59
Query: 185 REVPPP 202
+ PP
Sbjct: 60 KPGSPP 65
>U54559-1|AAD03465.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 215 LELRAVGEPPFLATK*REMFRPPQPSSRL--VL*H*QRMCCCPAN*NSWSSQN-GNLFVA 45
++ ++ GEPP ++F+PPQP +R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>CR456906-1|CAG33187.1| 352|Homo sapiens EIF3S3 protein.
Length = 352
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 215 LELRAVGEPPFLATK*REMFRPPQPSSRL--VL*H*QRMCCCPAN*NSWSSQN-GNLFVA 45
++ ++ GEPP ++F+PPQP +R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>BT019594-1|AAV38401.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 215 LELRAVGEPPFLATK*REMFRPPQPSSRL--VL*H*QRMCCCPAN*NSWSSQN-GNLFVA 45
++ ++ GEPP ++F+PPQP +R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>BC090880-1|AAH90880.1| 349|Homo sapiens EIF3H protein protein.
Length = 349
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 215 LELRAVGEPPFLATK*REMFRPPQPSSRL--VL*H*QRMCCCPAN*NSWSSQN-GNLFVA 45
++ ++ GEPP ++F+PPQP +R+ +L Q C N +++QN G LF+A
Sbjct: 283 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 341
>BC000386-1|AAH00386.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa protein.
Length = 352
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 215 LELRAVGEPPFLATK*REMFRPPQPSSRL--VL*H*QRMCCCPAN*NSWSSQN-GNLFVA 45
++ ++ GEPP ++F+PPQP +R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>AK222620-1|BAD96340.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa variant
protein.
Length = 352
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 215 LELRAVGEPPFLATK*REMFRPPQPSSRL--VL*H*QRMCCCPAN*NSWSSQN-GNLFVA 45
++ ++ GEPP ++F+PPQP +R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>AF092576-1|AAC84044.1| 352|Homo sapiens translation initiation
factor eIF3 p40 subunit protein.
Length = 352
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -1
Query: 215 LELRAVGEPPFLATK*REMFRPPQPSSRL--VL*H*QRMCCCPAN*NSWSSQN-GNLFVA 45
++ ++ GEPP ++F+PPQP +R+ +L Q C N +++QN G LF+A
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARMDSLLIAGQINTYC-QNIKEFTAQNLGKLFMA 344
>AK095548-1|BAC04570.1| 153|Homo sapiens protein ( Homo sapiens
cDNA FLJ38229 fis, clone FCBBF2004256. ).
Length = 153
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Frame = -3
Query: 267 KLFFRCTMFCYYL----RRFAP*AP-CGGGTSLSCHQVKRNVPTA-TTVIAPS-AIALAA 109
+L F C++FC+ L F P +P C LS H + P + ++ ++PS A+ L+
Sbjct: 9 RLVFACSLFCFSLLLLRLGFPPASPLCACECPLSAHPLSLCPPVSLSSSVSPSHALPLSF 68
Query: 108 DVLLPCELEFLVI 70
+ L L +V+
Sbjct: 69 SLFLRLSLSLIVL 81
>AK222520-1|BAD96240.1| 352|Homo sapiens eukaryotic translation
initiation factor 3, subunit 3 gamma, 40kDa variant
protein.
Length = 352
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 215 LELRAVGEPPFLATK*REMFRPPQPSSRL 129
++ ++ GEPP ++F+PPQP +R+
Sbjct: 286 MQRQSRGEPPLPEEDLSKLFKPPQPPARM 314
>AJ431212-1|CAD24050.1| 77|Homo sapiens truncated steroid
21-hydroxylase protein.
Length = 77
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 122 IALGAMTVVAVGTFLFTWWQEREVPPPHGAQG 217
+ L + ++A L+ WW+ R +PPP G
Sbjct: 4 LGLLLLPLLAGARLLWNWWKLRSLPPPASCPG 35
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,944,832
Number of Sequences: 237096
Number of extensions: 1020551
Number of successful extensions: 1937
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1937
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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