Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27k03
         (751 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK056994-1|BAB71337.1|  500|Homo sapiens protein ( Homo sapiens ...    32   1.9  
BC063136-1|AAH63136.1|  538|Homo sapiens NEB protein protein.          31   3.3  

>AK056994-1|BAB71337.1|  500|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32432 fis, clone SKMUS2001157, highly similar to
           Homo sapiens nebulin (NEB) gene. ).
          Length = 500

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
 Frame = +1

Query: 115 TSRILRVKHNQEMMSFVFQN*I*EMMSFVFQN*TGFTSIILLVKHNQ-GMMSFVFQN*TG 291
           T  + RVKHNQE +S V      E M          T  +  VKHNQ  + S +++   G
Sbjct: 29  TPEMQRVKHNQENLSSVLYK---ENMG--KGTPLPVTPEMERVKHNQENISSVLYKENMG 83

Query: 292 ------FTSRILRVKHNQKMMSFVFQN*MMSFVFQN*TGFTSRILRVKHNQKMMSFV 444
                  T  + RVKHNQ+ +S V     M          T  + RVKHNQ+ +S V
Sbjct: 84  KGTPLPVTPEMERVKHNQENISSVLYKENMG--KGTPLAVTPEMERVKHNQENISSV 138


>BC063136-1|AAH63136.1|  538|Homo sapiens NEB protein protein.
          Length = 538

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
 Frame = +1

Query: 115 TSRILRVKHNQEMMSFVFQN*I*EMMSFVFQN*TGFTSIILLVKHNQ-GMMSFVFQN*TG 291
           T  + RVKHNQE +S V      E M          T  +  VKHNQ  + S +++   G
Sbjct: 67  TPEMQRVKHNQENLSSVLYK---ENMG--KGTPLPVTPEMERVKHNQENISSVLYKENMG 121

Query: 292 ------FTSRILRVKHNQKMMSFVFQN*MMSFVFQN*TGFTSRILRVKHNQKMMSFV 444
                  T  + RVKHNQ+ +S V     M          T  + RVKHNQ+ +S V
Sbjct: 122 KGTPLPVTPEMERVKHNQENISSVLYKENMG--KGTPLPVTPEMERVKHNQENISSV 176


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,371,851
Number of Sequences: 237096
Number of extensions: 1488267
Number of successful extensions: 1358
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)