Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27k03
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               26   0.43 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.3  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 306 STCKTQSKDDVICFSKLNDVICFSKL 383
           S C   +K    C + LN +ICFSKL
Sbjct: 116 SECINANKSTDKCENGLNFIICFSKL 141


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 168 SKLNLRNDVICFSKLNWLYEYNST 239
           + +NL   ++C S L+W   +NST
Sbjct: 287 ASVNLICHILCMSDLHWQLPHNST 310



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 12  VICFSKLNWLYEYNST 59
           ++C S L+W   +NST
Sbjct: 295 ILCMSDLHWQLPHNST 310


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 33  NWLYEYNSTCKT*SRDDVICFSKLNSL 113
           NW+ + NS     +R+ + CF  +N L
Sbjct: 545 NWMLDLNSGLNKITRNSLDCFFTMNDL 571



 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 285 NWLYE*NSTCKTQSKDDVICFSKLNDV 365
           NW+ + NS     +++ + CF  +ND+
Sbjct: 545 NWMLDLNSGLNKITRNSLDCFFTMNDL 571



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 213 NWLYEYNSTCKT*SRDDVICFSKLN 287
           NW+ + NS     +R+ + CF  +N
Sbjct: 545 NWMLDLNSGLNKITRNSLDCFFTMN 569


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 33  NWLYEYNSTCKT*SRDDVICFSKLNSL 113
           NW+ + NS     +R+ + CF  +N L
Sbjct: 545 NWMLDLNSGLNKITRNSLDCFFTMNDL 571



 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 285 NWLYE*NSTCKTQSKDDVICFSKLNDV 365
           NW+ + NS     +++ + CF  +ND+
Sbjct: 545 NWMLDLNSGLNKITRNSLDCFFTMNDL 571



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 213 NWLYEYNSTCKT*SRDDVICFSKLN 287
           NW+ + NS     +R+ + CF  +N
Sbjct: 545 NWMLDLNSGLNKITRNSLDCFFTMN 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,649
Number of Sequences: 438
Number of extensions: 2863
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)