Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27j24
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 182 4e-47
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.46
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 28 1.1
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 27 2.4
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 26 4.2
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 5.6
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 25 5.6
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 25 7.4
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 25 7.4
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 7.4
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 25 7.4
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 25 9.8
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 25 9.8
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 182 bits (442), Expect = 4e-47
Identities = 84/167 (50%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Frame = +2
Query: 53 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 232
MPQNEYIE + +GRR D+ RGIKAK++ ++RR EKIQ
Sbjct: 1 MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60
Query: 233 MKKKIKAHEEKNV-KHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 409
MKK IK HEE+N + ++ +GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP
Sbjct: 61 MKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVP 120
Query: 410 IPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKF 550
+P+VR A+ E+FKV+++GKSK+ +WKRM+TK TFVG+ FTR+P K+
Sbjct: 121 LPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKY 167
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 29.1 bits (62), Expect = 0.46
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -3
Query: 298 FGDLLCVMFDILLFVRFDFLFHLNLFIAAFLIEYF-SFDTAEFARLFSAFMRLTSF-TLP 125
F LL F +L F+ F F F F++ I YF SF F LF F+ + F +
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHF--LFFFFLCVCVFLSFL 170
Query: 124 FSL 116
FSL
Sbjct: 171 FSL 173
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 1.1
Identities = 22/84 (26%), Positives = 45/84 (53%)
Frame = +2
Query: 209 ERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 388
E+ + K+++ ++ +K ++ TEK+ + + +R VQS + +M +QK +E
Sbjct: 82 EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140
Query: 389 AGKWDVPIPKVRAQADAEVFKVLK 460
K+ KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -3
Query: 259 FVRFD-FLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 137
FV D FL+ LF LI +F+ F LFS F S
Sbjct: 171 FVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNS 212
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 278 NTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 412
N K +E + +++D+ R+ +LSN+ K K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 206 KERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPV 313
+ + NE + + + ++ E+N NTE++AE + P+
Sbjct: 98 ENQENEADEAENEETSYSEQNHTENTEEIAEESRPL 133
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 53 MPQNEYIERHQKL 91
+PQ EY+E+H+KL
Sbjct: 195 LPQTEYLEKHKKL 207
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 7.4
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 332 VQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVT 511
+Q R +VLS ++++ K++ V PK + + ++LKS + + T T
Sbjct: 40 LQPRLEVLSQLLRECPKQEL---TVNGPKFHSMY-LYISEILKSKAESLRIRNSLATLQT 95
Query: 512 FVGENFTRKP 541
F+ E RKP
Sbjct: 96 FLAELSVRKP 105
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 236 KKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQ-SRAKVLSN 361
+KKIK+ +EK + H + + E L +V+ S A++L+N
Sbjct: 83 EKKIKSKQEKEIAHALQSIQERELRERQQMSNVEASNAQLLTN 125
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 7.4
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 269 VKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVF 448
V H K +PV + +QS ++L ++I+ +RKE GK D I ++ + + F
Sbjct: 371 VTHEQAKFLLSVIPVNQDFKALQSYRRILDSVIQPERKE--GKLDNLINTLQDKKKSSTF 428
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 220 IAAFLIEYFSFDTAEFARLF-SAFMRLTSFTLP 125
IAAFL YFS AEF F S LT+ P
Sbjct: 229 IAAFLSSYFSPPNAEFDSTFCSTLSSLTNSEKP 261
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 24.6 bits (51), Expect = 9.8
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +2
Query: 185 IKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNM 364
+K KI +E +E ++ K+ K E+N + +T VAE P + + + +++
Sbjct: 204 LKQKI--EEENDEILEDSKESKDENEENKETSTTNVAETDAP----EEETVDTVEEIADE 257
Query: 365 IKQKRKEKAGK 397
K KE++G+
Sbjct: 258 EKHSVKEESGE 268
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 302 ALPVYLLDRDVQSRAKVLSNMIKQKRKE 385
+LP + + D+ S V N+IK+K E
Sbjct: 249 SLPAFKIQEDIPSEKIVCYNVIKEKSNE 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,373
Number of Sequences: 5004
Number of extensions: 36362
Number of successful extensions: 129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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