Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27j24
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 189 1e-48
04_04_1253 + 32097840-32097963,32098154-32098329,32098413-320986... 30 1.1
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884 29 2.5
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773... 29 3.3
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 28 5.7
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 28 5.7
12_01_0388 + 3059296-3060076,3060290-3061474,3061565-3061695,306... 27 10.0
07_03_1612 - 28140155-28140781,28140913-28141182 27 10.0
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 189 bits (461), Expect = 1e-48
Identities = 93/165 (56%), Positives = 108/165 (65%)
Frame = +2
Query: 56 PQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQM 235
PQ ++IE HQK +GRRLDY L G K K F K+R EK QM
Sbjct: 333 PQGDHIELHQKRHGRRLDYEERKRKRAAREVHKRSRDARQLLGAKGKRFAKKRYAEKAQM 392
Query: 236 KKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIP 415
KK +K H+E + + V EGALP YLLDRD RAKVLSN IKQKR EKAGKW+VP+P
Sbjct: 393 KKTLKMHDESTSRQKVDDVQEGALPPYLLDRDQTQRAKVLSNTIKQKRMEKAGKWEVPLP 452
Query: 416 KVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKF 550
KVR A+ E+FKVL++GK K K WKRMVTK TFVG FTRKPPK+
Sbjct: 453 KVRPVAEEEMFKVLRTGKRKTKQWKRMVTKATFVGPGFTRKPPKY 497
>04_04_1253 +
32097840-32097963,32098154-32098329,32098413-32098622,
32098720-32098879,32098993-32099212,32099288-32099438
Length = 346
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = +2
Query: 290 VAEGALPVYLLDRDVQSRAKVLSN----MIKQKRKEKAGKWDVPIPKVRAQADAEVFKVL 457
VA GA P +D V + +++ M K EKA W +P+ + AE+F
Sbjct: 201 VAVGASPAVRVDTSVPACLSLITGDEEMMNILKGIEKASGWSMPMVHIEDVCRAEIFVAE 260
Query: 458 KSGKSKRKAWKRMVTKVTFVGENFTRKPPKF 550
+ S R + T VT + K P++
Sbjct: 261 EESASGRYICGSLNTTVTEIAGFLAAKYPQY 291
>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
Length = 271
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 281 TEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAE 442
TE++ EG + L D++ + +M+K KEK K P P++ +A AE
Sbjct: 133 TEEILEGVARLRL-SNDIEFEEETFLDMMKTA-KEKRAKLKAPAPQIPMEARAE 184
>02_05_0492 -
29476883-29476949,29477030-29477166,29477292-29477383,
29477490-29477587,29477677-29477804,29477883-29478026,
29478108-29478397,29478553-29478739,29479085-29479210,
29480488-29480538,29480952-29481002,29482639-29484054
Length = 928
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 305 LPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRA--QADAEVFKVLKSG 466
LP+Y +DRD + +LS + + R + A + +P+ + A + DA+ + +L G
Sbjct: 165 LPMYGMDRDTPALNSLLSALCRASRLDDA-RAAIPVARAEAGTRPDADSYAILLEG 219
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 27.9 bits (59), Expect = 5.7
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Frame = -3
Query: 265 LLFVRFDFLFHLNLFIAAFLIEYF-----SFDTAEFARLFSAFMR--LTSFTLPFS 119
+LF+ F FLF LN+ AF+I F S T FA F+ +T+F P+S
Sbjct: 310 ILFLLF-FLFQLNMLSFAFMISTFVTKAASATTVGFAIFIIGFLTQLVTTFGFPYS 364
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 27.9 bits (59), Expect = 5.7
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Frame = +2
Query: 206 KERRNEKIQMKKKIKAHEE-----KNVKHNTEKVAEGALPVY-LLDRD-VQS--RAKVLS 358
KE + + + + ++K +EE ++ K EK+ E P + ++D D V++ + + +
Sbjct: 4 KESKKSRDRGRDRVKWNEENLNDIESTKPVREKITEPKTPYHSMIDEDDVENYQQENIWN 63
Query: 359 NMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKR 493
++ +K+K+K K K + + + + K K K K+K KR
Sbjct: 64 PVVMKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKR 108
>12_01_0388 +
3059296-3060076,3060290-3061474,3061565-3061695,
3061793-3061873,3062329-3062367
Length = 738
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +2
Query: 176 LRGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSR 343
L+ + A +E+ K++ +KK A +EK+ ++ + V+ L+D Q++
Sbjct: 624 LKRLNAHASGREKDGSKVEKRKKKSAKQEKSSRNVKQAVSSQTADTVLVDPPNQNQ 679
>07_03_1612 - 28140155-28140781,28140913-28141182
Length = 298
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 479 KAWKRMVTKVTFVGENFTRKPPK 547
KAW+R+ T TF+ ++ PP+
Sbjct: 38 KAWRRITTNPTFLSDHARHHPPE 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,787,752
Number of Sequences: 37544
Number of extensions: 221628
Number of successful extensions: 636
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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