Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27j24
(552 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical pr... 200 7e-52
AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical ... 200 7e-52
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 33 0.18
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 30 1.3
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 29 1.7
Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z68106-2|CAA92126.2| 402|Caenorhabditis elegans Hypothetical pr... 29 2.2
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 29 2.2
AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical... 29 2.2
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 29 2.2
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 29 2.2
AF026209-11|AAB71282.1| 353|Caenorhabditis elegans Seven tm rec... 29 2.2
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 29 2.9
U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 29 2.9
Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p... 28 5.1
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 27 6.8
AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode poly... 27 6.8
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 27 6.8
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z49936-5|CAE47467.1| 801|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical pr... 27 9.0
U56964-6|AAB54035.1| 848|Caenorhabditis elegans Hypothetical pr... 27 9.0
AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and inte... 27 9.0
AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and inte... 27 9.0
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical... 27 9.0
>Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 200 bits (487), Expect = 7e-52
Identities = 95/166 (57%), Positives = 123/166 (74%)
Frame = +2
Query: 53 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 232
MPQNE+IE H+K +GRRLD+ LRG KAK+++K+R +EK++
Sbjct: 1 MPQNEHIELHRKRHGRRLDHEERQRKKLARAAHDRSQMAKTLRGHKAKLYHKKRYSEKVE 60
Query: 233 MKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 412
M+K +K HEEK+ K+ E+ +GA+P YLLDR Q+ VLSNMIKQKRK+KAGK++VPI
Sbjct: 61 MRKLLKQHEEKDQKNTVEQPDKGAVPAYLLDRQQQTSGTVLSNMIKQKRKQKAGKFNVPI 120
Query: 413 PKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKF 550
P+VRA +DAE FKV+K+GK+ RK WKRMVTKVTFVGE+FTRKP KF
Sbjct: 121 PQVRAVSDAEAFKVVKTGKTNRKGWKRMVTKVTFVGESFTRKPAKF 166
>AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 200 bits (487), Expect = 7e-52
Identities = 95/166 (57%), Positives = 123/166 (74%)
Frame = +2
Query: 53 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 232
MPQNE+IE H+K +GRRLD+ LRG KAK+++K+R +EK++
Sbjct: 1 MPQNEHIELHRKRHGRRLDHEERQRKKLARAAHDRSQMAKTLRGHKAKLYHKKRYSEKVE 60
Query: 233 MKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 412
M+K +K HEEK+ K+ E+ +GA+P YLLDR Q+ VLSNMIKQKRK+KAGK++VPI
Sbjct: 61 MRKLLKQHEEKDQKNTVEQPDKGAVPAYLLDRQQQTSGTVLSNMIKQKRKQKAGKFNVPI 120
Query: 413 PKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKF 550
P+VRA +DAE FKV+K+GK+ RK WKRMVTKVTFVGE+FTRKP KF
Sbjct: 121 PQVRAVSDAEAFKVVKTGKTNRKGWKRMVTKVTFVGESFTRKPAKF 166
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 32.7 bits (71), Expect = 0.18
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 188 KAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTE-KVAEGALPVYLLDRDVQSRAKVLSNM 364
K K +ERR E+ + KK+K +EK N + + E +++ + A+ L N+
Sbjct: 989 KIKAAEEERRKERAEDAKKVKEGQEKIAILNAKVQEKEDKSEARRKQKEMDNEAEKLLNV 1048
Query: 365 IKQKRKEK-AGKW 400
K+K K K KW
Sbjct: 1049 EKEKEKRKIIEKW 1061
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 188 KAKIFNKERRNEKIQM-KKKIKAHEEKNVKHNTEKV 292
K K+ KER EK++ ++++KA EEK VK EKV
Sbjct: 950 KVKV-EKERNKEKVKAEEERLKAEEEK-VKIEKEKV 983
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Frame = +2
Query: 206 KERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKE 385
+E R E+I+ KK+ + ++K + + AE + V L ++ + R +VL ++ KRK
Sbjct: 429 EEERLEEIRRKKE-EERKKKEEEDEKRRKAEESERVRKL-KEEEKRKRVLEEEMEMKRKN 486
Query: 386 KAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGE-NFTRKPPKF 550
+ K + AE+ + + ++ +K K K+ + F + P F
Sbjct: 487 EEAKIKLEAEMREKAEQAEIKRREEKSRALKKLQKEETNKMEQMNNCTFLQNVPLF 542
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 29.9 bits (64), Expect = 1.3
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Frame = +2
Query: 206 KERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNM--IKQKR 379
+E NEK++++++I+ E KN E + E LLDR+ + KV + ++++
Sbjct: 831 EELENEKLKLEEEIQEMEIKN----EEALKENLKLSMLLDREKSEKVKVQKELEEVEKQG 886
Query: 380 KEKAGKWDVPIPKV--RAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRK 538
+EK + + K + + E+F VL + K + V K+ V + RK
Sbjct: 887 REKLLEKEREFRKTMEEMEQNEEIFNVL---ERKYNEQHKKVMKMNDVLREYERK 938
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 221 EKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSR--AKVLSNMIKQKRKEKAG 394
E+ + ++K A +EK ++ E+ E A Y L ++Q + A +K++ KE+
Sbjct: 942 ERREAEEKAAAEQEKILRRKMEEEREKAQKEYELQLEMQKQKLAAEAEEEVKRRNKEERD 1001
Query: 395 KWDVPIPKVRAQAD 436
+ D + A +D
Sbjct: 1002 RLDAAVSSRLASSD 1015
>Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 29.1 bits (62), Expect = 2.2
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 203 NKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKR- 379
N E+ + + ++ K + H EK N E + EG PV++ + Q + + +R
Sbjct: 18 NDEKPAKSVLLEPKYRDHHEKISFRNKENMEEGEKPVFVSMANPQPTREDYERYDEDRRL 77
Query: 380 KEKAGKWDVPIPKVRAQADAE 442
K+KA D+ I + R A E
Sbjct: 78 KDKAR--DLRIARRRNSATPE 96
>Z68106-2|CAA92126.2| 402|Caenorhabditis elegans Hypothetical
protein F41E7.3 protein.
Length = 402
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 211 FLIEYFSFDTAEFARLFSAFMRLTSFTLPFSLLII*PSTVKLLMALN 71
FLI + AEF +F + + F LPF L+ I S +K+ + LN
Sbjct: 190 FLICSEDWSNAEFRSIFGIVVMILQFILPFVLIAI--SYIKIWLFLN 234
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 29.1 bits (62), Expect = 2.2
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = +2
Query: 239 KKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP--I 412
+KIK H K ++ + +GA V + ++++ A+ + + + KE + DV I
Sbjct: 967 EKIKEHVASGDKEASKALVKGA--VDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKI 1024
Query: 413 PK----VRAQADAEVFKVLKSGKSKRKAWKRMVTKV 508
K ++A+ E+ K+ K GKSK KR+ V
Sbjct: 1025 EKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 1060
>AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 29.1 bits (62), Expect = 2.2
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 203 NKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKR- 379
N E+ + + ++ K + H EK N E + EG PV++ + Q + + +R
Sbjct: 18 NDEKPAKSVLLEPKYRDHHEKISFRNKENMEEGEKPVFVSMANPQPTREDYERYDEDRRL 77
Query: 380 KEKAGKWDVPIPKVRAQADAE 442
K+KA D+ I + R A E
Sbjct: 78 KDKAR--DLRIARRRNSATPE 96
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c protein.
Length = 1198
Score = 29.1 bits (62), Expect = 2.2
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = +2
Query: 239 KKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP--I 412
+KIK H K ++ + +GA V + ++++ A+ + + + KE + DV I
Sbjct: 725 EKIKEHVASGDKEASKALVKGA--VDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKI 782
Query: 413 PK----VRAQADAEVFKVLKSGKSKRKAWKRMVTKV 508
K ++A+ E+ K+ K GKSK KR+ V
Sbjct: 783 EKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 818
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 29.1 bits (62), Expect = 2.2
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Frame = +2
Query: 239 KKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP--I 412
+KIK H K ++ + +GA V + ++++ A+ + + + KE + DV I
Sbjct: 967 EKIKEHVASGDKEASKALVKGA--VDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKI 1024
Query: 413 PK----VRAQADAEVFKVLKSGKSKRKAWKRMVTKV 508
K ++A+ E+ K+ K GKSK KR+ V
Sbjct: 1025 EKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 1060
>AF026209-11|AAB71282.1| 353|Caenorhabditis elegans Seven tm
receptor protein 262 protein.
Length = 353
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = -3
Query: 310 RQGTFGDLLCVMFDILLFVRFDFLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTSFT 131
++ F + + D LLFV F F +++ F+ +FS + + ++F +++ + FT
Sbjct: 77 KESIFPATMSCLMD-LLFVGF-FGTSMSILALHFIYRFFSVTNSRYLKIFDSWLIIPIFT 134
Query: 130 LP 125
+P
Sbjct: 135 VP 136
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 28.7 bits (61), Expect = 2.9
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Frame = +2
Query: 188 KAKIFNKERRNEKIQMKKKIKAHEEK--NVKHNTEKVAEGALPVYLLDRDVQSRAKVLSN 361
K K +KE+ EK + K+KIK E+K +++ TE+ +E A L + + + L
Sbjct: 389 KEKEKDKEKEREKRKSKEKIKEKEKKMGSLEKTTERTSE-APSTNALPKAKPKKIRTLPP 447
Query: 362 MIKQKRKEKAGKWDV-------PIPKVRAQADAEVFK--VLKSGKSKRKA 484
KQK + + V PI K + A+V K V G SK+KA
Sbjct: 448 --KQKHTKTSSTSSVSHQTPPSPIKKPSPKLPAQVKKKTVSTGGGSKQKA 495
>U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical
protein F41G3.3 protein.
Length = 577
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 254 HEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLS--NMIKQKRKEKAGKWD 403
+ KNV EK+ G P+ + D D+ A V + +Q++ +KA +W+
Sbjct: 305 NSSKNVAEVVEKMNNGDWPIQIEDEDIPPSAAVNNPKRGYQQQQADKARQWE 356
>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 320 LDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQAD 436
++R++ RAK + + ++K G+WD P A +D
Sbjct: 169 VERELADRAKAGELHVTGQPEKKKGRWDAEAPSTDASSD 207
>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 320 LDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQAD 436
++R++ RAK + + ++K G+WD P A +D
Sbjct: 169 VERELADRAKAGELHVTGQPEKKKGRWDAEAPSTDASSD 207
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
gene nameprotein 213 protein.
Length = 1437
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/86 (25%), Positives = 40/86 (46%)
Frame = +2
Query: 188 KAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMI 367
K K+ +++ + + + KKIK +KN ++EKV + V+ + + +A V N
Sbjct: 1174 KEKVVDEKDKADGEPVDKKIKVDSKKNGTTSSEKVVKDD-EVHQNGSETEKKATV-DNKE 1231
Query: 368 KQKRKEKAGKWDVPIPKVRAQADAEV 445
++KR K+ K D EV
Sbjct: 1232 RKKRPGKSSHGSKESKKEPTTEDGEV 1257
>AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (51.7 kD) protein.
Length = 444
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 371 QKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKV 508
+ R++ A K + + ++A+ E+ K+ K GKSK KR+ V
Sbjct: 19 KSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 64
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 371 QKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKV 508
+ R++ A K + + ++A+ E+ K+ K GKSK KR+ V
Sbjct: 770 KSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 815
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 27.1 bits (57), Expect = 9.0
Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Frame = +2
Query: 191 AKIFNKERR---NEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSN 361
A+ F+K+ R ++ ++A +NVK+ TEK++E + + + QS +V +
Sbjct: 486 AETFHKDHRPIVEFSVENLLALQARARRNVKNTTEKMSERVVNEKIRQQVKQSIGEVHTA 545
Query: 362 MI---------KQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTK 505
+ K + + +G+ + +V+A +++ ++ S K+KA K+ V+K
Sbjct: 546 GMKFLPKFTGKKIRHRNLSGRAKKNVDRVKAAKNSKQPEMPTSVGKKKKAMKKNVSK 602
>Z49936-5|CAE47467.1| 801|Caenorhabditis elegans Hypothetical
protein F13B10.1e protein.
Length = 801
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 18 W*QRKLPNKQPTCRRTNILSAIKSFTVDG*IMRREN--GSVKLVSLINALKRRANS 179
W +R LP QP+ RR A FT++ I + +N + + I ALK A+S
Sbjct: 345 WLERLLPMLQPSRRREARSVAAFHFTLEATIKKEQNKLDVFQEIGAIQALKEVASS 400
>Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical
protein F13B10.1c protein.
Length = 1000
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 18 W*QRKLPNKQPTCRRTNILSAIKSFTVDG*IMRREN--GSVKLVSLINALKRRANS 179
W +R LP QP+ RR A FT++ I + +N + + I ALK A+S
Sbjct: 528 WLERLLPMLQPSRRREARSVAAFHFTLEATIKKEQNKLDVFQEIGAIQALKEVASS 583
>Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical
protein F13B10.1a protein.
Length = 930
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 18 W*QRKLPNKQPTCRRTNILSAIKSFTVDG*IMRREN--GSVKLVSLINALKRRANS 179
W +R LP QP+ RR A FT++ I + +N + + I ALK A+S
Sbjct: 474 WLERLLPMLQPSRRREARSVAAFHFTLEATIKKEQNKLDVFQEIGAIQALKEVASS 529
>U56964-6|AAB54035.1| 848|Caenorhabditis elegans Hypothetical
protein F52E4.7 protein.
Length = 848
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 179 RGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKHNTEKV 292
RGI+ + +++ +I++KK I H K VK E++
Sbjct: 745 RGIRPDEISYQQQFSRIELKKVISQHPGKEVKKGLEQL 782
>AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform c protein.
Length = 984
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 18 W*QRKLPNKQPTCRRTNILSAIKSFTVDG*IMRREN--GSVKLVSLINALKRRANS 179
W +R LP QP+ RR A FT++ I + +N + + I ALK A+S
Sbjct: 528 WLERLLPMLQPSRRREARSVAAFHFTLEATIKKEQNKLDVFQEIGAIQALKEVASS 583
>AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform a protein.
Length = 931
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 18 W*QRKLPNKQPTCRRTNILSAIKSFTVDG*IMRREN--GSVKLVSLINALKRRANS 179
W +R LP QP+ RR A FT++ I + +N + + I ALK A+S
Sbjct: 475 WLERLLPMLQPSRRREARSVAAFHFTLEATIKKEQNKLDVFQEIGAIQALKEVASS 530
>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
protein Y39B6A.18 protein.
Length = 1352
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 188 KAKIFNKERRNEKIQM-KKKIKAHEEKNVKHNTEKV 292
K K+ KER EK++ ++++KA EEK VK EKV
Sbjct: 911 KVKV-EKERNKEKVKAEEERLKAEEEK-VKIEKEKV 944
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,102,618
Number of Sequences: 27780
Number of extensions: 200887
Number of successful extensions: 836
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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