Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27j24
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   1.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   1.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   2.1  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   3.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.3  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 200 FNKERRNEKIQMKKKIKAHEEKNVKHNT 283
           + K+RR EK+  +K+    E  N K N+
Sbjct: 12  YRKDRRYEKLHNEKEKLLEERTNRKRNS 39


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 200 FNKERRNEKIQMKKKIKAHEEKNVKHNT 283
           + K+RR EK+  +K+    E  N K N+
Sbjct: 12  YRKDRRYEKLHNEKEKLLEERTNRKRNS 39


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +1

Query: 439 RSIQSPKIW*IKKKSLETHGHQ 504
           +S++  ++W  K K+ E HG++
Sbjct: 191 QSVEKSELWVYKSKASEEHGNK 212


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 439 RSIQSPKIW*IKKKSLETHG 498
           +S++  ++W  K K+ E HG
Sbjct: 159 QSVEKSELWVYKSKASEEHG 178


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 468 LPDFRTLNTSASAWALTLGM 409
           +PD RTLNT  S   L   M
Sbjct: 392 IPDLRTLNTLHSEKLLAFKM 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,833
Number of Sequences: 438
Number of extensions: 2660
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)