Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27j22
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...   166   5e-42
L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical pr...    32   0.14 
Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...    30   0.55 
Z81089-3|CAB03137.1|  275|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical pr...    26   6.7  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    26   6.7  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    26   6.7  
Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    26   8.9  
AF099003-1|AAC68742.1|  440|Caenorhabditis elegans Hypothetical ...    26   8.9  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score =  166 bits (403), Expect = 5e-42
 Identities = 76/101 (75%), Positives = 88/101 (87%)
 Frame = +2

Query: 53  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 232
           M  A K +K  E+INSRL++VMK+G+Y LGYKQTLK+L  GKAKLVIIA N PPLRKSEI
Sbjct: 1   MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPLRKSEI 60

Query: 233 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLALTDPGD 355
           EYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+TD GD
Sbjct: 61  EYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGD 101


>L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical
           protein ZK686.1 protein.
          Length = 44

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +2

Query: 110 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 205
           +VMK+G+Y L Y+Q LK+L    AKLVI  K+
Sbjct: 1   MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31


>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 26  GFISIYAPKMVAAKKQKKTIESINSRLALV 115
           GF +I  P  V AKK   ++E+IN+R  L+
Sbjct: 138 GFATIVGPNTVQAKKNDGSVETINARNILI 167


>Z81089-3|CAB03137.1|  275|Caenorhabditis elegans Hypothetical
           protein F53H4.4 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = +2

Query: 32  ISIYAPKMVAAKKQKKTIESINSRLALVM------KSGKYCLGYKQTLKTLRQGKAKLVI 193
           +S   P M A K + + +   N RLA+ M      +SG Y     Q  ++LR       +
Sbjct: 171 LSKLTPSMFAEKARPRRVRERNGRLAVRMSRISWNRSGLYYNAIIQFFESLRG-----TV 225

Query: 194 IAKNAPPLRKSEIEYYALLAKTGVH 268
           I +   PL +  + Y  +L  T  H
Sbjct: 226 ITQGEQPLCEKSVTYQEMLKHTLAH 250


>Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical
           protein F55B12.6 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 188 PALLCLVEEFSKFACILSNIFPISSP 111
           PAL    EEFSKF  +L  I+P   P
Sbjct: 290 PALNLDSEEFSKFVTLLYAIYPAIDP 315


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 83  WSFSVSLLQPFWERKC 36
           W +S+S L P W+++C
Sbjct: 140 WQYSLSFLAPKWDKQC 155


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 236 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLALTDPG 352
           +Y LLA  G+     + +ELGTA   YY +    LT  G
Sbjct: 252 FYCLLA--GLSREEKSELELGTAADYYYLIQGKTLTAEG 288


>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 77  KTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 193
           KT++ IN  + L       C G+++ L+ L++   KL +
Sbjct: 182 KTLQEINLDIVLSDNEDVTCAGFRELLRFLKEISYKLTV 220


>AF099003-1|AAC68742.1|  440|Caenorhabditis elegans Hypothetical
           protein Y59C2A.2 protein.
          Length = 440

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 7/27 (25%), Positives = 19/27 (70%)
 Frame = +1

Query: 85  RVN*LPPCFGDEIGKILLRIQANFENS 165
           R++    CFGD++ ++++R+   +E++
Sbjct: 306 RIDSKSQCFGDQLARLMMRLFVGYEDT 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,491,191
Number of Sequences: 27780
Number of extensions: 154637
Number of successful extensions: 378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)