Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27j22
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   1.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.4  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   5.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   5.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   7.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 259 RCSPLQREQH*IRNSMRKILQSVHTRPHR 345
           RC P  +    +   +R+ +Q+VHTRP +
Sbjct: 4   RCEPCNKILTSLTR-LRRHIQNVHTRPSK 31


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 328 AHSVVFSACCS*F 290
           AH VV SAC S F
Sbjct: 49  AHKVVLSACSSYF 61


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 225 DFLSGGAFLAMITSFALPCRRV 160
           DFL+GG   A+  +   P  RV
Sbjct: 13  DFLAGGVAAAISKTTVAPIERV 34


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 225 DFLSGGAFLAMITSFALPCRRV 160
           DFL+GG   A+  +   P  RV
Sbjct: 13  DFLAGGVAAAISKTTVAPIERV 34


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 65  KKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLR 169
           +KQ+  I +   + A   K  K+ + YK+ LK  R
Sbjct: 413 QKQRAEILAKEHKAAADQKLEKHLIEYKKMLKIKR 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,867
Number of Sequences: 438
Number of extensions: 1653
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)