Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27j12
(446 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 71 1e-13
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 49 3e-07
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 41 1e-04
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 36 0.004
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 34 0.009
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 34 0.011
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 34 0.011
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 33 0.020
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 30 0.14
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.14
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 29 0.33
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 28 0.75
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 2.3
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 3.0
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 25 7.0
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 7.0
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 24 9.3
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|... 24 9.3
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 24 9.3
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 70.5 bits (165), Expect = 1e-13
Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +1
Query: 250 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 426
F DF+ GG+SAAVSKTA APIERVKLL+Q Q + + RYKGI + F R E+G
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEG 86
Query: 427 LLSFWR 444
++S WR
Sbjct: 87 VISLWR 92
Score = 29.5 bits (63), Expect = 0.25
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +1
Query: 250 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 429
FA + +GG + A S V ++ + L S + ++++ G+VD + + + GL
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGL 191
Query: 430 LSFWR 444
+R
Sbjct: 192 RGLYR 196
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 49.2 bits (112), Expect = 3e-07
Identities = 23/60 (38%), Positives = 40/60 (66%)
Frame = +1
Query: 265 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 444
L+GG++A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+R
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFR 77
Score = 33.9 bits (74), Expect = 0.011
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +1
Query: 220 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDA 399
K + AD AF K FL GG + + +T P + ++ QV + YK I A
Sbjct: 217 KFFSNADLTAFQKLFL-GGFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSA 272
Query: 400 FVRIPKEQGLLSFWR 444
I K +G+ F+R
Sbjct: 273 IFHIYKTEGINGFFR 287
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 40.7 bits (91), Expect = 1e-04
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +1
Query: 256 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 429
K +AGG + V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGL 75
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 35.5 bits (78), Expect = 0.004
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 247 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 423
+F KDFLA G+S V++ V P + VK+ LQ Q I Y +D +I K +
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69
Query: 424 GLLSFWR 444
GL +F++
Sbjct: 70 GLAAFYK 76
Score = 32.7 bits (71), Expect = 0.026
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +1
Query: 241 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKE 420
PV + +++G IS + V P+E V++ LQ+Q K + Y G D +I +
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQ 163
Query: 421 QGL 429
GL
Sbjct: 164 YGL 166
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 34.3 bits (75), Expect = 0.009
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 262 FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 438
FL+GG++A + T P E +K Q+Q ++K + + YK + AF I + +G+
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEGIRGL 86
Query: 439 WR 444
R
Sbjct: 87 QR 88
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 33.9 bits (74), Expect = 0.011
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 265 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 444
++GG+S A++ + P++ VK LLQ + S I ++ KG +D I G+ SF++
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFFK 267
Score = 31.9 bits (69), Expect = 0.046
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 265 LAGGISAAVSKTAVAPIERVKLLLQVQH-VSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 441
LAG S + + + P++ +K +Q+ + VS+ ++ + IV++ ++I +G+ S W
Sbjct: 24 LAGAFSGILEHSVMYPVDAIKTRMQMLNGVSRSVSGN-----IVNSVIKISSTEGVYSLW 78
Query: 442 R 444
R
Sbjct: 79 R 79
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 33.9 bits (74), Expect = 0.011
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 238 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLL 336
DP F++GGI+ VS+T AP++R+K++L
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML 155
Score = 31.5 bits (68), Expect = 0.061
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 271 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 444
G +S + T V P+ ++ LQ Q S A Y G +D F + K +G ++
Sbjct: 342 GALSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYK 396
Score = 27.1 bits (57), Expect = 1.3
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +1
Query: 262 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSK 357
+LAGG++ +V++ + P++ +K +Q +S+
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR 263
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 33.1 bits (72), Expect = 0.020
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 262 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 441
FL G ++ ++ PI+ VK +Q ++A + YK + +I + GLL FW
Sbjct: 207 FLVGSVAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFW 260
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 30.3 bits (65), Expect = 0.14
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 AKDFLAGGISAAVSKTAVAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGL 429
A L G + V P E +K+ LQ V++ SK Y G VD F +I K++ +
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERI 157
Query: 430 LSFW 441
L+ +
Sbjct: 158 LALY 161
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 30.3 bits (65), Expect = 0.14
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 199 VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQ 339
V +T +N SN P + F+AGG++ + A AP++ VK LQ
Sbjct: 32 VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQ 77
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 0.33
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 265 LAGGISAAVSKTAVAPIERVKLLLQVQHVS 354
LAGGIS+ + + +AP + +K+ +Q+ S
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS 50
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.9 bits (59), Expect = 0.75
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 256 KDFLAGGISAAVSKTAVAPIERVKLLLQVQ 345
KD +AGG + S VAP++ VK Q Q
Sbjct: 7 KDAIAGGAAGLASSLVVAPLDVVKTRKQAQ 36
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 364 AADQRYKGIVDAFVRIPKEQGLLSFWR 444
A Y DAF +I K +GL +F+R
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYR 251
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 99 YEITPNLLFKNQELVFRDPPSACAATPTSTY 191
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 404 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 297
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 111 PNLLFKNQELVFRDPPSACAATPT 182
P + K E + RDPP A PT
Sbjct: 4 PKRIIKEIETLTRDPPPGIVAAPT 27
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 7.0
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 79 TLC--APVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLV 201
T+C AP + L ++C+K+ C + PR PR+ HL+
Sbjct: 551 TICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRNPRN-HLL 592
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 24.2 bits (50), Expect = 9.3
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Frame = +1
Query: 160 PRVPQLPPRHIHLVKIT*SNKMSNLADPVAFAKDFLAG----GISAAVSKTAVAPI--ER 321
P PQ P ++I ++ +PV FA L + T P
Sbjct: 96 PTTPQTPKTPKRTIQIVTPKSLNRTCNPVPFATRLLQSTPHRQLFPPTPSTPSTPSYNST 155
Query: 322 VKLLLQVQHVSKQIAADQRYKGIVDAFVR 408
KL L+ + S + + K IV++F R
Sbjct: 156 AKLSLRKSYRSAGVVGRENEKSIVESFFR 184
>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 24.2 bits (50), Expect = 9.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 129 NQELVFRDPPSACAATPTSTYSPSEDHIIEQNVEP-RRSGR 248
N EL PS+ AATPT + S +I + RSG+
Sbjct: 75 NDELAESSKPSSGAATPTRSAPKSSAGLINSGLRALDRSGK 115
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 24.2 bits (50), Expect = 9.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 374 WSAAICLLTCCTWSSSLTRSMGATAVLETAAEIPPA 267
WSA +CL+ C SL + E A I PA
Sbjct: 152 WSAMVCLMAACRNGPSLLGLRFLAGIFE--ASITPA 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,729
Number of Sequences: 5004
Number of extensions: 33968
Number of successful extensions: 121
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -