Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27j11
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    52   3e-08
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    52   3e-08
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    24   5.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   6.8  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 51.6 bits (118), Expect = 3e-08
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = +2

Query: 251 GKVHGSLARAGKVKGQTPKVEKQQK 325
           GKVHGSLARAGKVK QTPKVEKQ+K
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEK 26


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 51.6 bits (118), Expect = 3e-08
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = +2

Query: 251 GKVHGSLARAGKVKGQTPKVEKQQK 325
           GKVHGSLARAGKVK QTPKVEKQ+K
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEK 26


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 327 FFCCFSTLGVCPLTLPAR 274
           FFCC S +GV  +  P R
Sbjct: 335 FFCCLSAVGVLHMLNPFR 352


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 133 KSTNAFLDLTNGLLAIDVQDVCRLPSDMQL 44
           + T+  +D     LA+ ++D+C  P D+QL
Sbjct: 337 EDTDCLIDYLVATLAL-IRDLCAAPPDLQL 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,210,274
Number of Sequences: 5004
Number of extensions: 19126
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)