Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27j11
         (330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    56   6e-09
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical ...    27   3.2  
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z81492-3|CAB04030.1|  382|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AC024818-1|AAK29945.2|  375|Caenorhabditis elegans Hypothetical ...    26   7.3  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = +2

Query: 242 LLGGKVHGSLARAGKVKGQTPKVEKQQKK 328
           LLGGKVHGSLARAGKV+ QTPKV+KQ KK
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVDKQDKK 96


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 33   FTICSCISEGNRHTSWTSMARS 98
            F I  C   G  HT WT   RS
Sbjct: 4931 FIIICCFENGTSHTEWTGTLRS 4952


>AF016682-8|AAO38605.1|  422|Caenorhabditis elegans Hypothetical
           protein T07D3.9b protein.
          Length = 422

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 152 LHHQLQQEYECVP*SDQWTPGH*R-PGRVSIAL*YATAYCKI 30
           LH   ++E EC P   +    H + PGR S A  YA   C+I
Sbjct: 375 LHDGKRRESECAPCGSKALCAHHKLPGRTSAAEQYAEKNCEI 416


>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 160  SKVFITNCSKSTNAFLDLTNGLL 92
            S VF  +CS+++N FL  T+ +L
Sbjct: 2026 SNVFCNSCSQASNVFLSSTDEIL 2048


>Z81492-3|CAB04030.1|  382|Caenorhabditis elegans Hypothetical
           protein E03H4.6 protein.
          Length = 382

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 148 ITNCSKSTNAFLDLTNGLLAIDVQDVCRLPSDMQLH 41
           I N   +   FL     LL   V  VC  PS+++LH
Sbjct: 42  IRNTEVNVKRFLSSVFDLLTDPVCPVCEFPSNVELH 77


>AC024818-1|AAK29945.2|  375|Caenorhabditis elegans Hypothetical
           protein Y54H5A.2 protein.
          Length = 375

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 38  NMQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDED 154
           N+  H   +  H L       IGQ+   I+     GDED
Sbjct: 119 NVSRHFPDRVDHKLKARNANYIGQLLNEIKKSVETGDED 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,902,668
Number of Sequences: 27780
Number of extensions: 113013
Number of successful extensions: 247
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)