Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27j02
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    29   0.53 
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   6.5  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   6.5  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   8.7  

>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 190 FSAIDAGIAARVCERVYVSPEAAVQNHLTAPISTS*NPMVPAVY 321
           FSAID  I + + +RV VSP    +N+L AP  T+    + AV+
Sbjct: 461 FSAIDKQIRSIIPQRVQVSPAVLAKNYL-APGQTTALAQMRAVF 503


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 439 NPLTGREHDGARDKP 483
           NPL G +HDG   +P
Sbjct: 253 NPLVGSQHDGVESRP 267


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +2

Query: 389 PRDAPVFE*PQLGMEFAILSPVANTTAQEINHMKFILRNPV--QSYQPYRSRRLHSDVKR 562
           P  +  FE PQLG       P +NT     +    + R P+   S+   RS R++   + 
Sbjct: 32  PNQSMTFEKPQLGQFVLTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHRVNKIGRS 91

Query: 563 GRHYNARLQTLRK 601
            +  +  L T+ K
Sbjct: 92  SQQCDHVLSTVDK 104


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 488 KFILRNPVQSYQPYRSRRLHSDVKRGRHYNARLQTLRKL 604
           +F  + P+   +   SR LH  + + +  NA  +T+RK+
Sbjct: 449 EFDYKGPIARKRTSESRHLHYLMAKAKRENADSKTIRKI 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,779
Number of Sequences: 5004
Number of extensions: 46856
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)