Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27j02
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0372 + 7864015-7864065,7864167-7864208,7864292-7864322,786...    31   0.71 
12_01_0690 - 5903578-5904567,5905269-5905468,5905562-5906618           28   5.0  
08_02_0536 - 18302394-18302826,18302903-18303183,18303480-183037...    28   6.7  
12_02_0005 + 12192100-12192474                                         25   6.8  
11_06_0029 - 19405555-19405638,19405799-19405881,19405977-194061...    27   8.8  
06_03_1152 + 28044667-28045239,28045330-28045750,28045940-28046298     27   8.8  
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735     27   8.8  
01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883     27   8.8  
01_01_0735 + 5730783-5733320                                           27   8.8  

>03_02_0372 +
           7864015-7864065,7864167-7864208,7864292-7864322,
           7864472-7864653
          Length = 101

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 210 YCSTCVRARLCVARGRSPEPLDC-AYKHILESYGSSSIP 323
           YC+ C +  LCV  G S    +C  Y ++  S G+S  P
Sbjct: 63  YCNICCQKCLCVPSGTSGNKEECPCYNNLKSSQGNSKCP 101


>12_01_0690 - 5903578-5904567,5905269-5905468,5905562-5906618
          Length = 748

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -3

Query: 430 HSKLRSLE---DGGVSGNCASEVQRHEAQTCFEDSRNFSGIL 314
           H KLR ++   + G+SGN  +  Q    +  F  S NF+G L
Sbjct: 314 HKKLRMIDLSKNPGISGNLPNFSQESSLENLFVSSTNFTGSL 355


>08_02_0536 -
           18302394-18302826,18302903-18303183,18303480-18303747,
           18303959-18303996,18304459-18304761
          Length = 440

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +3

Query: 216 STCVRARLCVARGRSPEPLDCAYKHILESYGSSSIPE---KLRESSKQVCASCRWTS 377
           S  +  R  VA  +  E ++  YK I   YG   +P+   +LRE    V A  +W +
Sbjct: 309 SVIIGERNRVATEKIQEAINHGYKRIAVLYGGGHMPDLGRRLREELNMVPADVQWVT 365


>12_02_0005 + 12192100-12192474
          Length = 124

 Score = 25.0 bits (52), Expect(2) = 6.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 430 HSKLRSLEDGGVSG 389
           HS+  ++EDGGVSG
Sbjct: 45  HSRAAAIEDGGVSG 58



 Score = 21.4 bits (43), Expect(2) = 6.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 415 SLEDGGVSGNCAS 377
           ++EDGGV G+ AS
Sbjct: 60  TVEDGGVGGSMAS 72


>11_06_0029 -
          19405555-19405638,19405799-19405881,19405977-19406118,
          19406190-19406348,19406649-19406726,19406854-19406982,
          19407468-19407563,19408896-19408988,19409378-19409608,
          19410177-19410350,19410983-19411126,19411229-19411765
          Length = 649

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 20 VSAPDLRLSVRRVRDATDLLH 82
          +SAPDLRL + R+R  +D LH
Sbjct: 22 LSAPDLRLLIDRLRIRSDRLH 42


>06_03_1152 + 28044667-28045239,28045330-28045750,28045940-28046298
          Length = 450

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 158 DVLKSRVSTFSVRIKLIGLDSARYIYAKDRWRRARASPIT 39
           D+L S  + F V+ +L   D ++ + AK RW RAR + ++
Sbjct: 129 DILASE-AVFPVQAELNVADGSKGLDAKGRWTRARVARVS 167


>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
          Length = 637

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 51  GACATPPIFCINITRAIQPNQFYTY 125
           GAC++PP+FC+ IT  +      T+
Sbjct: 395 GACSSPPVFCV-ITEFLSGGSLRTF 418


>01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883
          Length = 424

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 388 NCASEVQRHEAQTCFEDSRNFSGILLEP 305
           +C+ ++Q  E   C E + NFSG   EP
Sbjct: 372 SCSRQLQHQEGIACHEKAYNFSGWWSEP 399


>01_01_0735 + 5730783-5733320
          Length = 845

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 198 NRCGYCSTCVRARLCVARGRSPEPLDCA 281
           N C Y + C    +C++ G S E +DC+
Sbjct: 298 NYCQYPTVCGEYGICLSEGCSTEGMDCS 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,589,612
Number of Sequences: 37544
Number of extensions: 325220
Number of successful extensions: 882
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)