Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27j02
         (609 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF179181-1|ABN05284.1|  727|Homo sapiens LIM domain binding 3 pr...    32   1.4  
BC028689-1|AAH28689.2| 1050|Homo sapiens tripartite motif-contai...    32   1.4  
AK127592-1|BAC87048.1|  549|Homo sapiens protein ( Homo sapiens ...    32   1.4  
AJ133768-1|CAB46729.1|  470|Homo sapiens ZASP protein protein.         32   1.4  
AJ133767-1|CAB46728.1|  617|Homo sapiens ZASP protein protein.         32   1.4  
AF119042-1|AAD17258.1| 1016|Homo sapiens transcriptional interme...    32   1.4  
AF009353-1|AAB63585.1| 1012|Homo sapiens transcription intermedi...    32   1.4  
AB014513-1|BAA31588.1|  734|Homo sapiens KIAA0613 protein protein.     32   1.4  

>EF179181-1|ABN05284.1|  727|Homo sapiens LIM domain binding 3
           protein.
          Length = 727

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 204 CGYCSTCVRARLCVARGRS--PEPLDCAY 284
           CG+C+  +R    VA GRS  PE   CAY
Sbjct: 551 CGHCNNVIRGPFLVAMGRSWHPEEFTCAY 579


>BC028689-1|AAH28689.2| 1050|Homo sapiens tripartite
           motif-containing 24 protein.
          Length = 1050

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 273 DCAYKHILESY---GSSSIPEKLRESSKQVCASCRWTSDA 383
           +CA +HI++++    ++ +P    E S QVC SC   ++A
Sbjct: 133 ECAERHIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEA 172


>AK127592-1|BAC87048.1|  549|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45687 fis, clone FCBBF3020030, highly  similar
           to Transcription intermediary factor 1-alpha. ).
          Length = 549

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 273 DCAYKHILESY---GSSSIPEKLRESSKQVCASCRWTSDA 383
           +CA +HI++++    ++ +P    E S QVC SC   ++A
Sbjct: 91  ECAERHIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEA 130


>AJ133768-1|CAB46729.1|  470|Homo sapiens ZASP protein protein.
          Length = 470

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 204 CGYCSTCVRARLCVARGRS--PEPLDCAY 284
           CG+C+  +R    VA GRS  PE   CAY
Sbjct: 294 CGHCNNVIRGPFLVAMGRSWHPEEFTCAY 322


>AJ133767-1|CAB46728.1|  617|Homo sapiens ZASP protein protein.
          Length = 617

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 204 CGYCSTCVRARLCVARGRS--PEPLDCAY 284
           CG+C+  +R    VA GRS  PE   CAY
Sbjct: 441 CGHCNNVIRGPFLVAMGRSWHPEEFTCAY 469


>AF119042-1|AAD17258.1| 1016|Homo sapiens transcriptional
           intermediary factor 1 alpha protein.
          Length = 1016

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 273 DCAYKHILESY---GSSSIPEKLRESSKQVCASCRWTSDA 383
           +CA +HI++++    ++ +P    E S QVC SC   ++A
Sbjct: 133 ECAERHIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEA 172


>AF009353-1|AAB63585.1| 1012|Homo sapiens transcription intermediary
           factor 1 protein.
          Length = 1012

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 273 DCAYKHILESY---GSSSIPEKLRESSKQVCASCRWTSDA 383
           +CA +HI++++    ++ +P    E S QVC SC   ++A
Sbjct: 129 ECAERHIIDNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEA 168


>AB014513-1|BAA31588.1|  734|Homo sapiens KIAA0613 protein protein.
          Length = 734

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 204 CGYCSTCVRARLCVARGRS--PEPLDCAY 284
           CG+C+  +R    VA GRS  PE   CAY
Sbjct: 558 CGHCNNVIRGPFLVAMGRSWHPEEFTCAY 586


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,109,869
Number of Sequences: 237096
Number of extensions: 1661704
Number of successful extensions: 3948
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3948
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)