Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27j02
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z70034-10|CAI79119.2| 560|Caenorhabditis elegans Hypothetical p... 30 1.1
Z70034-3|CAA93860.2| 620|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z70034-2|CAA93854.3| 623|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z79757-5|CAB02126.2| 551|Caenorhabditis elegans Hypothetical pr... 28 4.5
AY491013-1|AAS18682.1| 464|Caenorhabditis elegans nose resistan... 28 4.5
AY491012-1|AAS18681.1| 573|Caenorhabditis elegans nose resistan... 28 4.5
>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical
protein C52E12.4 protein.
Length = 1487
Score = 31.1 bits (67), Expect = 0.64
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 305 WFQQYTGEVARIFKTSLCLVSLDFGRA-VPRDAPVF 409
W+ + T +F++++C+V LD GR+ +P D PVF
Sbjct: 358 WYYEDTVP-EELFQSNVCVVDLDTGRSELPEDVPVF 392
>Z70034-10|CAI79119.2| 560|Caenorhabditis elegans Hypothetical
protein C18E9.3c protein.
Length = 560
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 243 VARGRSPEPLDCAYKHILESYGSSSIPEKLRESSKQVCASCRWTSDAQFPETPP 404
+ R +SPE L ++++E YG E + + ++ V ++T D + PP
Sbjct: 159 IDRSKSPETLKMTQQNMVEHYGEELSRELMEQPAEIVPPERQYTPDFTLQQPPP 212
>Z70034-3|CAA93860.2| 620|Caenorhabditis elegans Hypothetical
protein C18E9.3b protein.
Length = 620
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 243 VARGRSPEPLDCAYKHILESYGSSSIPEKLRESSKQVCASCRWTSDAQFPETPP 404
+ R +SPE L ++++E YG E + + ++ V ++T D + PP
Sbjct: 219 IDRSKSPETLKMTQQNMVEHYGEELSRELMEQPAEIVPPERQYTPDFTLQQPPP 272
>Z70034-2|CAA93854.3| 623|Caenorhabditis elegans Hypothetical
protein C18E9.3a protein.
Length = 623
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 243 VARGRSPEPLDCAYKHILESYGSSSIPEKLRESSKQVCASCRWTSDAQFPETPP 404
+ R +SPE L ++++E YG E + + ++ V ++T D + PP
Sbjct: 222 IDRSKSPETLKMTQQNMVEHYGEELSRELMEQPAEIVPPERQYTPDFTLQQPPP 275
>Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical
protein H19N07.2c protein.
Length = 1135
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 215 AIPASIAENTLHHFKCFKVDVLKSRVSTF-SVRIKLIGLDS 96
+IP N + KC VD SR +F V++ ++G+DS
Sbjct: 298 SIPNLFRGNMKSYIKCLDVDYESSRTESFYDVQLNVLGMDS 338
>Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical
protein H19N07.2b protein.
Length = 1130
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 215 AIPASIAENTLHHFKCFKVDVLKSRVSTF-SVRIKLIGLDS 96
+IP N + KC VD SR +F V++ ++G+DS
Sbjct: 298 SIPNLFRGNMKSYIKCLDVDYESSRTESFYDVQLNVLGMDS 338
>Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical
protein H19N07.2a protein.
Length = 1133
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 215 AIPASIAENTLHHFKCFKVDVLKSRVSTF-SVRIKLIGLDS 96
+IP N + KC VD SR +F V++ ++G+DS
Sbjct: 298 SIPNLFRGNMKSYIKCLDVDYESSRTESFYDVQLNVLGMDS 338
>Z79757-5|CAB02126.2| 551|Caenorhabditis elegans Hypothetical
protein F55B12.5 protein.
Length = 551
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 303 YGSSSIPEKLRESSKQVCASCRWTSDAQFPETP 401
Y SS+P+ L++ SK VC+ C A E P
Sbjct: 354 YTPSSLPKILQKLSKAVCSKCYVEVSANLTEQP 386
>AY491013-1|AAS18682.1| 464|Caenorhabditis elegans nose resistant
to fluoxetine protein.
Length = 464
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 303 YGSSSIPEKLRESSKQVCASCRWTSDAQFPETP 401
Y SS+P+ L++ SK VC+ C A E P
Sbjct: 242 YTPSSLPKILQKLSKAVCSKCYVEVSANLTEQP 274
>AY491012-1|AAS18681.1| 573|Caenorhabditis elegans nose resistant
to fluoxetine protein.
Length = 573
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 303 YGSSSIPEKLRESSKQVCASCRWTSDAQFPETP 401
Y SS+P+ L++ SK VC+ C A E P
Sbjct: 351 YTPSSLPKILQKLSKAVCSKCYVEVSANLTEQP 383
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,762,596
Number of Sequences: 27780
Number of extensions: 272470
Number of successful extensions: 733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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