Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27j02
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   1.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   1.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.4  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   7.1  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 427 NGVRNPLTGREHDGARDKP 483
           +G   P TGREHD A+  P
Sbjct: 391 SGSSTPGTGREHDPAKFPP 409


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 297 LGCAYRRSQVVLDCGLWRHINALAHTCCNTRIYCGEHFAPF 175
           +GC  R  + ++ C  +R   A+  T  N   +    F PF
Sbjct: 259 MGCPTRNVKEMIRCLRYRPARAIVETLANFMRFYYNPFTPF 299


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 297 LGCAYRRSQVVLDCGLWRHINALAHTCCNTRIYCGEHFAPF 175
           +GC  R  + ++ C  +R   A+  T  N   +    F PF
Sbjct: 259 MGCPTRNVKEMIRCLRYRPARAIVETLANFMRFYYNPFTPF 299


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 387 TARPKSNDTRHRLVLKILATSPVYCWNHR 301
           T  P++ D+RH    K   ++  Y W H+
Sbjct: 165 TFEPRATDSRHYDRYKEEESNENYNWEHK 193


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -1

Query: 297 LGCAYRRSQVVLDCGLWRHINALAHTCCNTRIYCGEHFAP 178
           +GC  R  + ++ C  +R   A+  T  N   +    F P
Sbjct: 130 MGCPTRNVKEMIRCLRYRPARAIVETLANFMRFYYNPFTP 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,935
Number of Sequences: 438
Number of extensions: 3229
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)