Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27i24
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.81
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce... 27 1.4
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 1.9
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 2.5
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 26 3.3
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 3.3
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 5.7
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 25 5.7
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 25 5.7
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 25 7.5
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 25 7.5
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 25 10.0
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 25 10.0
SPBC216.06c |swi1||replication fork protection complex subunit S... 25 10.0
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 28.3 bits (60), Expect = 0.81
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 170 NIPLYLLRKLIT*FVNDFDCFI*KVCISSICKAVLINI 283
N+PL L+ +T ++ D D + C++ +C + I I
Sbjct: 330 NVPLLLIFSYLTRYLTDRDIILLGCCLNIVCMVIHITI 367
>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 394 PGKEFRAPVLLAGPSLAPTHSVIQ 465
PG +R P+ P+L+PTH I+
Sbjct: 194 PGTSWRLPIRFVKPALSPTHVFIR 217
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 115 CNTSRAVGTRNS*RVSCVRGAPLDSR 38
CNT+RAV + R C+ G PL +R
Sbjct: 505 CNTARAVCGLRTTRKICLSGTPLQNR 530
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 407 NSFPGGAGSSNLRAPGNISISYNPSGGSRLGDN 309
+S G G SN A G + + NPSGG G N
Sbjct: 85 SSGTGMFGQSNTPAFGGTNNATNPSGGGLFGSN 117
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 446 GAREGPANSTGARNSFPGGAGSSNLRAPGNISISYNPSG 330
GA AN+ A S GG SSN N + + PSG
Sbjct: 411 GANNNTANNNTAPTSTFGGNNSSNFSFGANNNAATKPSG 449
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 310 TSDNTA*SLNIYQNSLTNTRNTNFLNKTIKIV 215
T DN + +Y N + R ++L KT++IV
Sbjct: 83 THDNNITTGKVYSNVIQKERRGDYLGKTVQIV 114
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 428 ANSTGARNSFPGGAGSSNLRAPGNISISYNPSGGSRL 318
++S G P + +S AP N+S ++PSG S L
Sbjct: 246 SHSAGVIPIKPTASNASIRNAPSNLSKQFSPSGNSPL 282
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 277 KYLKTMQCYPKLSPKREPPEGLYEIEMLP 363
KY + + YP LSP+ + P +++ ++P
Sbjct: 249 KYPEKEEIYPTLSPRIKKPRKVFDAVVIP 277
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 340 LYEIEMLPGARRLELPAPPGKEFRAPVLL 426
+YE LPG RL + P GK +++ V L
Sbjct: 128 IYENLYLPGKSRLVIEKPFGKNYQSAVKL 156
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 265 GCFDKYLKTMQCYPKLSPKREP 330
G FDKY ++Q P + P EP
Sbjct: 131 GIFDKYDDSVQANPNVPPLNEP 152
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = -3
Query: 446 GAREGPANSTGARNSFPGGAGSSNLRAPGNISISYNPSGGSRLG 315
G+R G G R F GG G + G GG+R G
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG 56
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 27 ANESRESSGAPRTHDTRYELRVPTALLVLHPCAHDEN 137
A E R+ +G RT T E VP LHPC E+
Sbjct: 1316 AFEWRQPTGYKRTPLTECEGGVPLDAGTLHPCPGKED 1352
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 271 NSLTNTRNTNFLNKTIKIVHKLRY 200
NSL +TR T N +I+ LRY
Sbjct: 197 NSLASTRVTGITNHQFRILRLLRY 220
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 24.6 bits (51), Expect = 10.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 428 ANST-GARNSFPGGAGSSNLRAPGNISISYNPSGGSRLGDNFG 303
+NST G+ N++ G GSSN S +Y +G S N+G
Sbjct: 54 SNSTYGSSNNY-GNYGSSNNYGSYGASNTYGSNGSSNNYGNYG 95
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 24.6 bits (51), Expect = 10.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 265 GCFDKYLKTMQCYPKLSPKR 324
GC D ++ +QCY L K+
Sbjct: 569 GCIDSFVLFLQCYQDLDSKQ 588
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,897
Number of Sequences: 5004
Number of extensions: 30471
Number of successful extensions: 90
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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