Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27i24
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 31 0.62
04_04_1173 + 31469357-31469920 31 0.82
09_04_0514 - 18236061-18237392 29 1.9
09_04_0182 + 15376025-15376498 29 2.5
07_01_0840 + 6831220-6831438,6831515-6831691 29 2.5
09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006 28 4.4
02_03_0265 + 17066253-17066501,17067102-17068121 28 4.4
08_02_0826 - 21583507-21583555,21584000-21584679 27 7.7
07_01_0432 + 3290546-3291911,3291972-3291988 27 7.7
03_06_0236 - 32545561-32546961 27 7.7
01_06_0700 - 31317825-31318253 27 7.7
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 31.1 bits (67), Expect = 0.62
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = -3
Query: 443 AREGPANSTGARNSFPGGAGSSNLRAPGNISISYNPSGGSR 321
AR GP++ + + S P AG S L +PG+ S S NP+ SR
Sbjct: 41 ARAGPSSPSSSSPSTPTAAGLSFLSSPGS-SASPNPAPRSR 80
>04_04_1173 + 31469357-31469920
Length = 187
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -3
Query: 449 VGAREGPANSTGARNSFPGGAGSSNLRAPGNISISYNPSGGSRLGDN 309
+G P NS+ A +S AG+ N +P + S S SGG R G N
Sbjct: 116 IGTSLPPENSSSAADSTAAAAGTLNSNSPSSSSSSSGGSGG-RAGRN 161
>09_04_0514 - 18236061-18237392
Length = 443
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 421 ARARGTPFPEEPAVLIFAPRVTSRSHII 338
A AR P PE A L+ APR S SH++
Sbjct: 91 APARSLPVPEPVAPLVAAPRGGSHSHLL 118
>09_04_0182 + 15376025-15376498
Length = 157
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -3
Query: 446 GAREGPANSTGARNSFPGGAGSS----NLRAPGNISISYNPSGGSRLGDNFG 303
G+R G + GA +S AGSS R + S SGGS LG FG
Sbjct: 93 GSRSGSVSVGGASSSAGSSAGSSAGSGGSRTGSSAGSSAGSSGGSGLGIGFG 144
>07_01_0840 + 6831220-6831438,6831515-6831691
Length = 131
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 274 DKYLKTMQCYPKLSPKREPPEGLYEIEM-LPGARRLELPAPPGKEFRAPV 420
D+ L ++C+PK+ P + PE +E ++ L +E+ +EF+ +
Sbjct: 57 DRLLDVLKCHPKVDPSKVSPEAHFEKDLGLDSLDTVEVVMAIEEEFKLEI 106
>09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006
Length = 585
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 446 GAREGPANSTGARNSFPGGAGSSNLRAPGN 357
G G A G+R S PGG GSS P +
Sbjct: 210 GVSGGDATVCGSRTSGPGGGGSSGAPGPSH 239
>02_03_0265 + 17066253-17066501,17067102-17068121
Length = 422
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 431 PANSTGARNSFPGGAGSSNLRA 366
PA S+GA+ + PGGA +S+ +A
Sbjct: 250 PAKSSGAKRNSPGGAAASSSKA 271
>08_02_0826 - 21583507-21583555,21584000-21584679
Length = 242
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 446 GAREGPANSTGA-RNSFPGGAGSSNLRAPGNISISYNPSGGSRLGDNFG 303
G+ G + +GA N+ PGGAGS G+ + S GGS G G
Sbjct: 121 GSSAGSSAESGAGSNAGPGGAGSYAGSRAGSYAGSNGGDGGSGAGSYAG 169
>07_01_0432 + 3290546-3291911,3291972-3291988
Length = 460
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 331 PEGLYEIEMLPGARRLELPAPPGKEFRAPVLLAGPSLAPTHSV 459
P G E++ P RL+ PAPP PVL ++AP S+
Sbjct: 212 PTGAPEVD--PRTHRLKKPAPPVPPGAPPVLPIWDAMAPGPSI 252
>03_06_0236 - 32545561-32546961
Length = 466
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 331 PEGLYEIEMLPGARRLELPAPPGKEFRAPVLLAGPSLAPTHSV 459
P G E++ P RL+ PAPP PVL ++AP S+
Sbjct: 214 PTGAPEVD--PRTHRLKKPAPPVPPGAPPVLPIWDAMAPGPSI 254
>01_06_0700 - 31317825-31318253
Length = 142
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 458 TECVGAREGPANSTGARNSFPGGAGSSNLRAPGNISIS 345
T GAR G G R + GAG+S+ P ++ ++
Sbjct: 56 TTFAGARRGYYEDDGTRTDYSAGAGASSRIVPPHVYVA 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,131,562
Number of Sequences: 37544
Number of extensions: 229278
Number of successful extensions: 875
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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