Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i24
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +1

Query: 376 LELPAPPGKEFRAPVLLAGPSLAPTHSVIQ 465
           L LPAPP    RA   L GP L P  S  Q
Sbjct: 425 LYLPAPPSSSVRAANELFGPPLTPGDSKTQ 454


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 140 KQMHIHEIQFNIPLYLLRKLIT*FVNDFDCFI 235
           K+ HI + + N+ LY+   L+T  ++D DC +
Sbjct: 123 KKFHIFQEENNVSLYMNDNLVTYELDDDDCLV 154


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 140 KQMHIHEIQFNIPLYLLRKLIT*FVNDFDCFI 235
           K+ HI + + N+ LY+   L+T  ++D DC +
Sbjct: 123 KKFHIFQEENNVSLYMNDNLVTYELDDDDCLV 154


>Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 425 NSTGARNSFPGGAGSSNLRAPGNISISYNPSGGSR 321
           +ST A +S   G+GS++L +PG  S S   +GGSR
Sbjct: 755 SSTTATSSSVSGSGSASLTSPGPASPS---AGGSR 786


>AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 425 NSTGARNSFPGGAGSSNLRAPGNISISYNPSGGSR 321
           +ST A +S   G+GS++L +PG  S S   +GGSR
Sbjct: 755 SSTTATSSSVSGSGSASLTSPGPASPS---AGGSR 786


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,942,440
Number of Sequences: 27780
Number of extensions: 191899
Number of successful extensions: 456
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)