Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i21
         (160 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    24   3.1  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    24   3.1  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    23   5.4  

>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 3   GCRLLFSRKINFIHHYSSYIXDKPIK 80
           GC    +RK N   H  +++ D+P +
Sbjct: 449 GCNKRIARKYNVESHIQTHLSDRPYR 474


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 54  SYIXDKPIKXXXDTSNALXEQILLLKELH 140
           S + +KP+      SN+L    LL KELH
Sbjct: 121 SNVSNKPLGDQLFRSNSLMSPSLLKKELH 149


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 42  HHYSSYIXDKPIKXXXDTSNALXEQILLLKELHLPSPRH 158
           HH S++   KP K    + ++L E+     E H   P++
Sbjct: 4   HHRSTFKAKKPFKSKHASKSSLKEKYKNEVEPHRSGPKN 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 487,268
Number of Sequences: 5004
Number of extensions: 5099
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)