Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i20
         (213 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   0.26 
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   0.26 
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   1.0  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    25   1.4  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    25   1.8  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    24   2.4  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    24   3.1  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    23   4.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    23   4.2  
SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   5.5  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    23   5.5  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    23   7.3  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    23   7.3  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    23   7.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    22   9.6  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    22   9.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    22   9.6  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    22   9.6  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 0.26
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -1

Query: 171 FFSVVAFISPDRSIFTFSDILGIF*FGVQYISII**VHYLLFYFGCMCCLI 19
           FF ++ F+S     F+FS +  +    + Y S    +H+L F+F C+C  +
Sbjct: 120 FFFLLFFLSFS---FSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFL 167


>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 27.5 bits (58), Expect = 0.26
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 185 TFGNLSFL-LXRLFHLTDQSLHFQTF*GFSNLVYSI*VLFSRYTIYYFI 42
           T G L F  L   FH     +HF      S+L  S+ +L SR   YYFI
Sbjct: 86  TLGELLFNDLSHAFHEKYPDVHFARVYLSSSLELSVRLLISRIPSYYFI 134


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -3

Query: 103 FLIWCTVYKYYLVG-----TLFIILFWLYVLFNIXXAKY 2
           F I+CT+  YYLV      T+FI L+ +     I  + +
Sbjct: 410 FSIFCTIAAYYLVSSSTKITVFIFLYLMLTFIGIIFSTF 448


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 83  YCTPN*KIPKMSENVKIDLSGEINATTEKK 172
           Y  P  K P++S+ +  +L+G I  T++KK
Sbjct: 516 YVYPEIKFPEISDLLFFNLTGSIFPTSDKK 545


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 107 PKMSENVKIDLSGEINATTEKKGFQKYVND 196
           PK+ +  K+  SGEIN   EKK ++K   D
Sbjct: 586 PKLPDFEKLS-SGEINEEEEKKIYKKLKKD 614


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 107 GFSNLVYSI*VLFSRYTIYYFILVVC 30
           G SNLV+S+   +S  +IY+ ++V C
Sbjct: 384 GKSNLVHSLFDYYSLNSIYFQMIVSC 409


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 173 LSFLLXRLFHLTDQSLHFQT 114
           +SFLL +LF LT +  +F T
Sbjct: 96  ISFLLAKLFRLTPRQRNFAT 115


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 210 NNNSASFTYFWKPFFSVVAFISPDRSIFTFSDI 112
           N +S SF+ F K    +   + PD+S    SD+
Sbjct: 81  NESSTSFSPFTKAHKEITDDLKPDKSFTRKSDL 113


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 130 LYIFRHFRDFL--IWCTVYKYYLVGTLFIILFWLYVLFNI 17
           L + R F+ FL   +C ++  +L       LFW Y+ FNI
Sbjct: 274 LTVERFFQHFLARFFCLIFFPFL-----FFLFWFYMHFNI 308


>SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 78  LYTVHQIRKSLKCLK 122
           LYT+ Q  KSL+CL+
Sbjct: 62  LYTIVQYFKSLRCLR 76


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 107 PKMSENVKIDLSGEINATTE--KKGF 178
           PK+SE V+  L   +NAT E   KGF
Sbjct: 276 PKLSEMVETALDVLLNATNEDTSKGF 301


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 124 IFRHFRDFLIWCTVYKYYLVGTLFIILFWLYVL 26
           ++RH+ D  I  T Y++  V  L I LF++ +L
Sbjct: 21  LYRHWVDRTIPYTTYRWLTVSGL-IALFFIRIL 52


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 94  WCTVYKYY 71
           +CTVYKYY
Sbjct: 179 YCTVYKYY 186


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 130 LYIFRHFRDFLI-WCTVYKYYLVGTLFIILFWLYVL 26
           L+I + F  + + WC      L GT+  ILFW++ L
Sbjct: 153 LWITKLFHIYSVNWCPSK---LGGTITYILFWMFSL 185


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 113  MSENVKIDLSGEINATTEKKGFQKYVN 193
            ++E + IDL+ E      K+  QK+ N
Sbjct: 1400 ITEEITIDLTAEAEKRAFKRDAQKWTN 1426


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 194 HSHTFGNLSFLLXRLFHLTD 135
           ++ +  +L +L+  +FHLTD
Sbjct: 486 YTESINHLVYLMEEVFHLTD 505


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 110 KMSENVKIDLSGEINATTEKKGFQKYV 190
           K+SE +K +  G+I   +E   FQ+++
Sbjct: 182 KVSEILKSEAGGQILGVSEVVDFQEFI 208


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 107 PKMSENVKIDLSGEINATTEKKGFQKYVNDAELLL 211
           P   EN +IDL  ++ A+  K+G     N    LL
Sbjct: 34  PLSHENNRIDLIRDLLASLSKEGVVAVYNHVRSLL 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 822,853
Number of Sequences: 5004
Number of extensions: 13971
Number of successful extensions: 41
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)