Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i20
         (213 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522...    26   3.6  
04_04_1334 - 32723950-32724121,32724527-32724558,32724665-327247...    26   3.6  
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706...    26   3.6  
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412...    26   4.8  
03_05_1105 + 30438140-30438350,30438448-30438926                       26   4.8  
12_01_0026 + 219663-220843,222201-222447,222574-224535                 25   8.3  
11_01_0026 + 193383-194566,195726-195972,196099-198063                 25   8.3  

>04_04_1624 -
           34849385-34849410,34849748-34851052,34852121-34852294,
           34852386-34852456,34852563-34852618,34853047-34853185,
           34853310-34853695,34853801-34853851,34853936-34854021,
           34854112-34854553,34856241-34856315,34856457-34856593,
           34856679-34856838,34856917-34857012,34857093-34857247,
           34857900-34858032
          Length = 1163

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 174 PFFSVVAFISPDRSIFTFSDILGI 103
           P F+VV  + P + ++   D+LGI
Sbjct: 683 PLFTVVQSVQPSKQMYNQDDVLGI 706


>04_04_1334 -
           32723950-32724121,32724527-32724558,32724665-32724708,
           32724962-32725123,32725984-32726422
          Length = 282

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -3

Query: 100 LIWCTVYKYYLVGTLFIILFWLYV 29
           L + TVY Y +VGT +I LFWL V
Sbjct: 232 LYFRTVY-YEMVGTNYIRLFWLGV 254


>03_05_0823 -
           27970038-27970258,27970279-27970544,27970608-27970657,
           27971272-27971538,27971633-27972001,27972373-27973278
          Length = 692

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 80  IYCTPN*KIPKMSENVKIDLSGEINATTEKKG 175
           IY  P+ K+  ++ENVK  +SG I   +E  G
Sbjct: 599 IYSLPHCKLGDLTENVKNPISGHIWLDSEGTG 630


>07_01_0554 -
           4121692-4121895,4121991-4122148,4123241-4123354,
           4123824-4124082
          Length = 244

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 136 INLYIFRHFRDFLIWCTVYKYYLVGTLFIILFWLYVL 26
           + LYIF     F++ C +Y Y+    + +IL  L+ +
Sbjct: 74  LGLYIFLIILPFIVLCPLYYYHQKHPVNLILLGLFTV 110


>03_05_1105 + 30438140-30438350,30438448-30438926
          Length = 229

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 130 LYIFRHFRDFLIWCTVYKYYL---VGTLFIILFWLYVLFNI 17
           LYIF     F++ C +Y YY    V  L + LF   + F +
Sbjct: 60  LYIFLIILPFIVLCPLYYYYQRHPVNLLLLALFTAAISFAV 100


>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 194  HSHTFGNLSFLLXRLFHLTDQSLHFQTF 111
            H +++GN    +  L H  D S++F+ F
Sbjct: 996  HENSYGNTEKSIDALLHSVDGSINFKPF 1023


>11_01_0026 + 193383-194566,195726-195972,196099-198063
          Length = 1131

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 194  HSHTFGNLSFLLXRLFHLTDQSLHFQTF 111
            H +++GN    +  L H  D S++F+ F
Sbjct: 997  HENSYGNTEKSIDALLHSVDGSINFKPF 1024


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,425,470
Number of Sequences: 37544
Number of extensions: 64150
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)