Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i20
         (213 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z81117-3|CAB03318.1|  334|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U39994-2|AAB37017.1|  378|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AC024791-35|AAF60675.2|  462|Caenorhabditis elegans Innexin prot...    25   7.3  
Z81562-2|CAB04559.1|  331|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical
           protein Y32B12B.7 protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 135 SIFTFSDILGIF*FGVQYISII**VHYLLFYFGC 34
           ++F F D++    + V YIS+    H + +YF C
Sbjct: 269 ALFEFFDLINTISYIVHYISLDAQAHVITWYFYC 302


>Z81117-3|CAB03318.1|  334|Caenorhabditis elegans Hypothetical
           protein T06E6.9 protein.
          Length = 334

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 133 NLYIFRHFRDFLIWCTVYKYYLVGTLFIILFWL 35
           NL +     +F IW T +K +L   +FI  F L
Sbjct: 168 NLPVELRSMNFFIWATDFKLFLGSFIFITAFQL 200


>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = -3

Query: 130 LYIFRHFRDFLIWCTVYK-----YYLVGTLFIILFWLYVLFNI 17
           L +  H+  FL WC VY      ++L    + I +   V+F I
Sbjct: 98  LAVMLHYAIFLPWCEVYSKPLMVFFLTALQYAIFYSFKVIFMI 140


>U39994-2|AAB37017.1|  378|Caenorhabditis elegans Hypothetical
           protein C48C5.1 protein.
          Length = 378

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 166 FCCXVYFT*QINLYIFRHFRDFLIWCTVYKYYLVGTLFII 47
           F C + F  Q  L+ +      L W   Y Y++ G LF +
Sbjct: 293 FICYLPFQLQRLLFFYFDNEVILTWVNQYMYFISGFLFYL 332


>AC024791-35|AAF60675.2|  462|Caenorhabditis elegans Innexin protein
           22 protein.
          Length = 462

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = -3

Query: 106 DFLIWCTVYKYYLVGTLFIILFWLYVL 26
           +F++ C + + ++   +F+ L+W Y+L
Sbjct: 265 EFIMRCILPQNFVNSKVFLFLYWWYIL 291


>Z81562-2|CAB04559.1|  331|Caenorhabditis elegans Hypothetical
           protein K03D7.4 protein.
          Length = 331

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 106 DFLIWCTVYKYYLVGTLFIILFWL 35
           +F IW   Y+ +L   LFI +F L
Sbjct: 175 NFFIWAKDYQVFLKSLLFITIFEL 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,474,120
Number of Sequences: 27780
Number of extensions: 75371
Number of successful extensions: 256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)