Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i19
         (322 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical pr...    28   1.3  
Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical p...    28   1.3  
U00047-5|AAA50691.1|  399|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z82260-14|CAB05142.2|  521|Caenorhabditis elegans Hypothetical p...    27   4.0  
Z73104-10|CAA97437.2|  521|Caenorhabditis elegans Hypothetical p...    27   4.0  
AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine re...    26   7.0  

>Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 287 LSGAGVYGIDPDSLYVVLYFLSTLTITAC--LQFTYF-KLLAMSLATNLTCRF 138
           +S + V+  +PDS+    Y+L  +T   C  +Q   F +LLA S   NLT  F
Sbjct: 238 ISSSRVFSFNPDSVRHFNYWLELITNFVCELIQMLSFAQLLAFSPGLNLTSIF 290


>Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 287 LSGAGVYGIDPDSLYVVLYFLSTLTITAC--LQFTYF-KLLAMSLATNLTCRF 138
           +S + V+  +PDS+    Y+L  +T   C  +Q   F +LLA S   NLT  F
Sbjct: 238 ISSSRVFSFNPDSVRHFNYWLELITNFVCELIQMLSFAQLLAFSPGLNLTSIF 290


>U00047-5|AAA50691.1|  399|Caenorhabditis elegans Hypothetical
           protein ZK418.7 protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +1

Query: 64  MAQVKIGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTT 243
           M +VKI  F F    F + ++   G +  + V       L ++NC    I   D+KY   
Sbjct: 1   MVEVKIYLFFFFRFHFAVHFLFGDGRMSGQSVP------LIFLNCSSIFIFGKDEKYAEC 54

Query: 244 YSESGSIP 267
             E+G+ P
Sbjct: 55  PIENGTDP 62


>Z82260-14|CAB05142.2|  521|Caenorhabditis elegans Hypothetical
           protein C32H11.1 protein.
          Length = 521

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = +1

Query: 58  IKMAQVKIGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKY--VNCKQAVIVNVDKK 231
           IK+  +  G   F +DT  +     + N Q+ F       ++KY  VN   ++ + V   
Sbjct: 359 IKVQSMDYGRTSFYQDT--METFTTEPNTQMYF-----KFNVKYFDVNGPTSLAIKVYNN 411

Query: 232 YKTTYSESGSIPYTPAPDNVVKQGDPL 312
            K  YSE+ +    P P NV   GD +
Sbjct: 412 AKIVYSETYTATNLPTPYNVRVYGDKM 438


>Z73104-10|CAA97437.2|  521|Caenorhabditis elegans Hypothetical
           protein C32H11.1 protein.
          Length = 521

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = +1

Query: 58  IKMAQVKIGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKY--VNCKQAVIVNVDKK 231
           IK+  +  G   F +DT  +     + N Q+ F       ++KY  VN   ++ + V   
Sbjct: 359 IKVQSMDYGRTSFYQDT--METFTTEPNTQMYF-----KFNVKYFDVNGPTSLAIKVYNN 411

Query: 232 YKTTYSESGSIPYTPAPDNVVKQGDPL 312
            K  YSE+ +    P P NV   GD +
Sbjct: 412 AKIVYSETYTATNLPTPYNVRVYGDKM 438


>AF068709-8|AAO26015.1|  315|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 59 protein.
          Length = 315

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/43 (25%), Positives = 27/43 (62%)
 Frame = -3

Query: 272 VYGIDPDSLYVVLYFLSTLTITACLQFTYFKLLAMSLATNLTC 144
           +YG+   S+ ++L+FL  L  +     ++++++ +SL  N++C
Sbjct: 27  IYGVP--SITLMLFFLFYLGNSKIYTNSFYRIVQISLLVNISC 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,524,673
Number of Sequences: 27780
Number of extensions: 111422
Number of successful extensions: 275
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)