Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i18
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    29   0.23 
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   3.7  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    24   6.5  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    24   6.5  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    23   8.6  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.23
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 189 CHIWFDTPAPFFSRYHTQTQ 248
           CHI +D PAP F  +H + Q
Sbjct: 26  CHISYDGPAPVFEYFHDKIQ 45


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 228 RYHTQTQKLGLQTPPG*TSHIQKIQEPFIDKP 323
           +Y T T K  L TPP    HI      F   P
Sbjct: 382 QYDTSTSKAELSTPPSKRRHIDDADLVFHSSP 413


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 137 LCSCSFYLINIFYAXHSTIELPNICLTRLGRLNFCCCVS*YFPS 6
           L +CS   I++ Y  +    LP I  +    LNF   ++ YF S
Sbjct: 120 LSTCSPLWISVIYLLNPLTFLPGIACSADMILNFTTLMTIYFAS 163


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 78  TPKYMFNSSWSFKFLLLCFLIFSI 7
           +PK ++N+SW+  + L   LI +I
Sbjct: 730 SPKLLYNASWASMYFLAKCLISTI 753


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 220 NGAGVSNHMWHRLKND 173
           N A V  H+W R +ND
Sbjct: 655 NSATVEKHIWERKEND 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,197,532
Number of Sequences: 5004
Number of extensions: 21582
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)