Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27i18
(324 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0083 - 604175-605776 28 1.5
08_01_0082 - 588269-588434,590800-591653 28 1.5
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 28 1.9
01_07_0315 - 42692539-42693260,42693357-42693609 27 3.4
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665... 27 3.4
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591... 27 4.5
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803... 27 4.5
01_07_0317 + 42699035-42699305,42699411-42700132 27 4.5
01_07_0318 + 42703176-42703473,42703563-42704290 26 5.9
01_06_0377 - 28867796-28868290 26 5.9
12_02_0159 + 14583033-14583042,14583176-14583364,14583435-14583490 26 7.8
07_03_0106 - 13460882-13462086,13463452-13463629 26 7.8
>08_01_0083 - 604175-605776
Length = 533
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 207 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 320
TPAP F R+ +T + + P G HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256
>08_01_0082 - 588269-588434,590800-591653
Length = 339
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 207 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 320
TPAP F R+ +T + + P G HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 226 LKNGAGVSNHMWHRLKNDDGDDKPCLN 146
L G G +NH H +DD DD P L+
Sbjct: 56 LMRGGGAANHHHHDDDDDDDDDVPWLH 82
>01_07_0315 - 42692539-42693260,42693357-42693609
Length = 324
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 307 GSWIFCMCEVYPGGVC-NPSF 248
G FCMC+ YPG C +P F
Sbjct: 79 GCKTFCMCDFYPGVSCGDPRF 99
>01_06_0903 +
32862551-32864752,32865341-32865535,32866219-32866523,
32866664-32866849,32867137-32867314,32867548-32867574
Length = 1030
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 159 LSSPSSFFNRCHIWFDTPAPFFSRYHTQT 245
LSSPS +R FDT PF R HTQ+
Sbjct: 626 LSSPSPRHSRAS--FDTAMPFTPRRHTQS 652
>04_04_0532 +
26058100-26058229,26058355-26058559,26058678-26059157,
26059262-26059354,26059526-26059636,26059720-26059792,
26060072-26060208,26061040-26061097
Length = 428
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 227 PVSHADAEARVTDAARVDLAHTEDPGAV 310
P + A R T A+VD A EDPG +
Sbjct: 87 PQAPPPAPTRATKKAKVDAAKNEDPGGM 114
>02_05_0970 -
33179180-33179210,33179297-33179441,33180307-33180362,
33180650-33180691,33180814-33180866,33181059-33181490,
33181630-33181707,33181785-33181870,33183588-33183689,
33183754-33183960,33184976-33185336,33185463-33185626,
33185709-33185817,33186468-33186485
Length = 627
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +3
Query: 138 ITQFKHGLSSPSSFFNRCHI-WFDTPAPFFSRYHTQTQKLGLQTPPG*TSHIQKIQEP 308
+T L+SP + + W + PA +HT Q PP H QK Q P
Sbjct: 472 LTTLGLNLNSPDNLYKTFGSPWSNEPAKGEPEFHTPACYSAEQPPPLQPIHFQKFQTP 529
>01_07_0317 + 42699035-42699305,42699411-42700132
Length = 330
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -3
Query: 295 FCMCEVYPGGVC-NPSF 248
FCMC+ YPG C +P F
Sbjct: 89 FCMCDFYPGVSCGDPRF 105
>01_07_0318 + 42703176-42703473,42703563-42704290
Length = 341
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = -3
Query: 295 FCMCEVYPGGVC-NPSF 248
FCMC+++PG C +P F
Sbjct: 98 FCMCDLFPGTSCGDPRF 114
>01_06_0377 - 28867796-28868290
Length = 164
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 230 VSHADAEARVTDAARVDLAHTED 298
V + DA V DAAR D AH +D
Sbjct: 18 VDNPDAARIVLDAARSDFAHNDD 40
>12_02_0159 + 14583033-14583042,14583176-14583364,14583435-14583490
Length = 84
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 105 NINKVKTTAT*ITQFKHGLSSPSSFFNRCH 194
NI+ KT T I Q S+P S RCH
Sbjct: 52 NIDVAKTVCTFIMQIDSYTSTPCSKLYRCH 81
>07_03_0106 - 13460882-13462086,13463452-13463629
Length = 460
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 289 MCEVYPGGVCNPSFCVCV*YRLKNGAGVSNHMWHRLKNDDGDDKPCL 149
+C+ + +C+P F YR +G+ + HRL+ DGD P L
Sbjct: 96 VCKAWLRAICDPVFLRR--YRAFHGSPPLLGLLHRLRVIDGDPAPRL 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,799,934
Number of Sequences: 37544
Number of extensions: 143739
Number of successful extensions: 293
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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