Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i18
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   1.2  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   3.7  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    20   6.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   6.5  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 319 LSMNGSW--IFCMCEVYPGGVCNPSFCVC 239
           LS+N S   I C+ +   GG C    C+C
Sbjct: 74  LSINHSACAIRCLAQRRKGGSCRNGVCIC 102


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 211 GVSNHMWHRLKNDDGDDKP 155
           G+S   WH+ +   G  KP
Sbjct: 2   GISRDHWHKRRATGGKRKP 20


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 69  IWEFNRRMXSVKNINKVK 122
           IW  NRRM   K +  VK
Sbjct: 54  IWFQNRRMKLKKELRAVK 71


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 233 IPAEERRRRVKPYVAPVEE 177
           +P  + RRRV+  +  VEE
Sbjct: 401 LPGNDARRRVEAALEAVEE 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,396
Number of Sequences: 438
Number of extensions: 1726
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)