Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i12
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    38   6e-05
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              24   1.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.4  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   7.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   7.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 38.3 bits (85), Expect = 6e-05
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
 Frame = +1

Query: 286 KTVIVTGCTSGIGKETARELAQRGARVIMACRNMDAAEKVKTEIIE-TTRNTKIEVKKLD 462
           +  +VTG  SGIGK     L  +G +VI     +D   K+KT + E  ++  K+   + D
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVD---KMKTLVEELKSKPGKLVPLQCD 64

Query: 463 LSSFASIREFAKDINKTEARLDVLVHNA 546
           LS+   I +  + + K    +D+L++NA
Sbjct: 65  LSNQNDILKVIEWVEKNLGAIDILINNA 92


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 367 IMACRNMDAAEKVKTEIIE 423
           +M CRN+ A  K+ TE+ E
Sbjct: 120 LMDCRNIGAVPKMATELYE 138


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 256 IYNGKTKMDGKTVIVTGCTSGIGKETARELAQR 354
           I+    ++DG+T    G T  + K  A ELA R
Sbjct: 63  IFTIAVQIDGQTYEGKGRTKKMAKHAAAELALR 95


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 16/81 (19%), Positives = 32/81 (39%)
 Frame = -2

Query: 614 WFVAIVISRLSTVVFFLNVSAYPALCTRTSRRASVLLMSLANSLIDANELRSSFLTSILV 435
           W +A++ +        +N   YP    R S  +++  M   N      E     L+ IL 
Sbjct: 158 WLIALIFAMPFATYVDINYVEYPQNSKRNSEESAICAMLKEN----MPEFPLYQLSCILF 213

Query: 434 FLVVSMISVLTFSAASIFLQA 372
           FL+  +   + +    + +Q+
Sbjct: 214 FLIPMVFIAVLYIRIGLRIQS 234


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 582 NCCVLFKCFGVSCVVHKDIQ 523
           N  V F   G+ CV  KDI+
Sbjct: 135 NMTVTFANLGIQCVKKKDIE 154


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 582 NCCVLFKCFGVSCVVHKDIQ 523
           N  V F   G+ CV  KDI+
Sbjct: 135 NMTVTFANLGIQCVKKKDIE 154


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -2

Query: 197 MAIRPAMIRAGRSHQR*LTFQNSATIMLVAFPIRW 93
           + ++    RAG S +R         +M+ AF + W
Sbjct: 90  LTLKKVRKRAGASGRREAKITKMVALMITAFLLAW 124


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 264 REDQNGREDGNSYR 305
           R + +  EDGNSYR
Sbjct: 233 RYEDSRHEDGNSYR 246


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 282 REDGNSYRMH*RNRKGNRQGIGSERRSSHNGLQE 383
           R   + +R     RK  R  I ++RR   NGL +
Sbjct: 862 RHAADKWRGAIEKRKTLRASIAAQRRIQSNGLND 895


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 326 RKPPGNWLREALES*W 373
           R+PP NWL     S W
Sbjct: 158 RQPPNNWLSVFWGSAW 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,374
Number of Sequences: 438
Number of extensions: 3584
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)