Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc27i10
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 165 2e-41
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 165 2e-41
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 165 2e-41
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 165 2e-41
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 149 8e-37
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 149 8e-37
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 58 5e-09
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 58 5e-09
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 33 0.087
AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical ... 32 0.20
AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical ... 32 0.20
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 31 0.35
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 29 1.4
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 29 1.4
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 2.5
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 2.5
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 29 2.5
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 2.5
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 2.5
U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical pr... 28 3.3
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 3.3
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 3.3
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 28 3.3
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 28 4.3
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 28 4.3
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 28 4.3
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 28 4.3
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 28 4.3
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 28 4.3
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 28 4.3
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 28 4.3
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 28 4.3
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 5.7
Z82286-5|CAB05311.1| 130|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 27 7.6
U97005-9|AAK72085.1| 829|Caenorhabditis elegans Hypothetical pr... 27 7.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 27 7.6
U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical pr... 27 7.6
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 27 7.6
Z50177-1|CAA90543.2| 607|Caenorhabditis elegans Hypothetical pr... 27 10.0
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 27 10.0
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 165 bits (401), Expect = 2e-41
Identities = 82/116 (70%), Positives = 91/116 (78%), Gaps = 1/116 (0%)
Frame = +3
Query: 153 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 332
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 333 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 497
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTA
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +3
Query: 165 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 344
F + A LGA Y G + +P L + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 345 VLI 353
+++
Sbjct: 156 LIL 158
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 165 bits (401), Expect = 2e-41
Identities = 82/116 (70%), Positives = 91/116 (78%), Gaps = 1/116 (0%)
Frame = +3
Query: 153 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 332
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 333 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 497
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTA
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +3
Query: 165 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 344
F + A LGA Y G + +P L + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 345 VLI 353
+++
Sbjct: 156 LIL 158
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 165 bits (401), Expect = 2e-41
Identities = 82/116 (70%), Positives = 91/116 (78%), Gaps = 1/116 (0%)
Frame = +3
Query: 153 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 332
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 333 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 497
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTA
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +3
Query: 165 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 344
F + A LGA Y G + +P L + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 345 VLI 353
+++
Sbjct: 156 LIL 158
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 165 bits (401), Expect = 2e-41
Identities = 82/116 (70%), Positives = 91/116 (78%), Gaps = 1/116 (0%)
Frame = +3
Query: 153 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYG 332
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M VMRPELIMKS+IPV+MAGII IYG
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYG 72
Query: 333 LVVAVLIAGAL-QEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 497
LVVA+++ G + A Y L KGF HL AGL G GL AG+AIGIVGDAGVRGTA
Sbjct: 73 LVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTA 128
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +3
Query: 165 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 344
F + A LGA Y G + +P L + I+ ++ + ++ +YG++VA
Sbjct: 96 FAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVA 155
Query: 345 VLI 353
+++
Sbjct: 156 LIL 158
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 149 bits (362), Expect = 8e-37
Identities = 70/114 (61%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
Frame = +3
Query: 150 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 329
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 330 GLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 488
GLVVAV+++G ++ ANY + F GL G GL AG+AIGI GDAGVR
Sbjct: 80 GLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVR 133
Score = 34.7 bits (76), Expect = 0.038
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +3
Query: 207 LGAAYGTAKSG-TGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGA 362
LGA Y +G G+ A+S +P + + I+ ++ A ++ +YG++VA LI GA
Sbjct: 118 LGAGYAIGIAGDAGVRALS-QQPRMFVGMILILIFAEVLGLYGMIVA-LILGA 168
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 149 bits (362), Expect = 8e-37
Identities = 70/114 (61%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
Frame = +3
Query: 150 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 329
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M+V RP+L+MK+IIPVVMAGI+AIY
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASMAVARPDLVMKAIIPVVMAGIVAIY 79
Query: 330 GLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 488
GLVVAV+++G ++ ANY + F GL G GL AG+AIGI GDAGVR
Sbjct: 80 GLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGLGAGYAIGIAGDAGVR 133
Score = 34.7 bits (76), Expect = 0.038
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +3
Query: 207 LGAAYGTAKSG-TGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGA 362
LGA Y +G G+ A+S +P + + I+ ++ A ++ +YG++VA LI GA
Sbjct: 118 LGAGYAIGIAGDAGVRALS-QQPRMFVGMILILIFAEVLGLYGMIVA-LILGA 168
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 57.6 bits (133), Expect = 5e-09
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Frame = +3
Query: 174 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 353
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 354 AGALQE--PANYP------------LYKGFIHLGAGLAVGFSGLAAGFAIGIVG 473
G L E + P L G++ G GL VG S L G A+GIVG
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVG 167
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 57.6 bits (133), Expect = 5e-09
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Frame = +3
Query: 174 MGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLI 353
+G ++ S LGA +G +G+ I V P + K+++ ++ +AI+G+++A +
Sbjct: 54 LGIGFSLSLSVLGAGWGIFTTGSSILGGGVKAPRIRTKNLVSIIFCEAVAIFGIIMAFVF 113
Query: 354 AGALQE--PANYP------------LYKGFIHLGAGLAVGFSGLAAGFAIGIVG 473
G L E + P L G++ G GL VG S L G A+GIVG
Sbjct: 114 VGKLAEFRREDLPDTEDGMAILARNLASGYMIFGGGLTVGLSNLVCGLAVGIVG 167
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 33.5 bits (73), Expect = 0.087
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 287 VDHSCRHGGYYCHLRSGRGCPDCWCPPG 370
V H C +GG+ + S R P C CP G
Sbjct: 1800 VGHECLNGGFCSYANSNRSLPHCICPSG 1827
>AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical
protein T22E7.1b protein.
Length = 310
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 386 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 288
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical
protein T22E7.1a protein.
Length = 341
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 386 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 288
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 31.5 bits (68), Expect = 0.35
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +1
Query: 64 SECVQIVITVFGTCKYSHI*QTKWLKIIQS-------TDPSLELWGRRLLSSSAPWELPM 222
SE V ++ F TC + + T + +QS ++ W R +L +PW L M
Sbjct: 283 SEAVPLLGVFFHTCNFISVLATSFTVYVQSFHFRNQHVHERMDFWMRFILLEWSPWLLRM 342
Query: 223 ELPSQE 240
++P +E
Sbjct: 343 KMPDRE 348
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 487 RTPASPTMPMAKPAARPENPTAKPAPK 407
+TPA PT +AKPA +P P + PAPK
Sbjct: 47 KTPARPT--VAKPAPKP-TPKSAPAPK 70
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 487 RTPASPTMPMAKPAARPENPTAKPAPK 407
+TPA PT +AKPA +P P + PAPK
Sbjct: 47 KTPARPT--VAKPAPKP-TPKSAPAPK 70
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 317 YCHLRSGRGCPDCWCPPGASQ 379
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 493 VPRTPASPTMPMAKPAARPENPTAKPAPK 407
VP P PT P +P RPE P +P P+
Sbjct: 96 VPPPPPPPTQPEPEPEPRPE-PQPEPQPE 123
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 299 CRHGGYYCHLRSGRGCPDCWCPPGASQ 379
C HG Y ++ SG GC +C C P S+
Sbjct: 915 CAHGFY--NITSGLGCQECNCDPLGSE 939
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 317 YCHLRSGRGCPDCWCPPGASQ 379
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 317 YCHLRSGRGCPDCWCPPGASQ 379
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical
protein C32E8.5 protein.
Length = 299
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 446 SQTRESYSQTSTQVDE-PFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLR 270
S++R+ ++ T+ D+ P +K V E S+ DS + D R DDR D D R
Sbjct: 24 SRSRDRQTRRDTRRDDSPKIKREVKE--EQFSDNDSPRRRRDDRGGRRDDRRDNRRDDRR 81
Query: 269 PH 264
H
Sbjct: 82 DH 83
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 490 PRTPASPTMPMAKPAARPENPTAKPAPK 407
P P +P P AKP RP + PA K
Sbjct: 639 PTGPPAPPKPPAKPRGRPPRKSISPAVK 666
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 490 PRTPASPTMPMAKPAARPENPTAKPAPK 407
P P +P P AKP RP + PA K
Sbjct: 639 PTGPPAPPKPPAKPRGRPPRKSISPAVK 666
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 267 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLY 392
RPE ++ +VMA + AIY + +++ L NY LY
Sbjct: 35 RPEYGSYKLLMMVMATLYAIYSAIEVIILPSYLVFEYNYLLY 76
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 320 CHLRSGR-GCPDCWCPPGASQLPP 388
C L + R GCP C CPP PP
Sbjct: 933 CQLVNDRSGCPFCSCPPVKQASPP 956
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 490 PRTPASPTMPMAKPAARPENPTAKPAP 410
P P P P + AA PE+P P P
Sbjct: 187 PAGPPGPAGPAGEDAAAPESPPGPPGP 213
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 299 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 424
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 299 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 424
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 494 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 318
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 317 N 315
N
Sbjct: 630 N 630
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 494 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 318
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 317 N 315
N
Sbjct: 630 N 630
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 494 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 318
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 609 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 668
Query: 317 N 315
N
Sbjct: 669 N 669
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 490 PRTPASPTM--PMAKPAARPENPTAKPAPK 407
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 490 PRTPASPTM--PMAKPAARPENPTAKPAPK 407
PRTP +P + P +P A P A+P P+
Sbjct: 434 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 463
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 490 PRTPASPTM--PMAKPAARPENPTAKPAPK 407
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 490 PRTPASPTM--PMAKPAARPENPTAKPAPK 407
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -1
Query: 490 PRTPASPTMPMAKPAARPEN--PTAKPAPKWMNP 395
P PA P+MP + A+PE P P P P
Sbjct: 562 PSEPAKPSMPSGESPAQPEPSIPAVNPEPSPSQP 595
>Z82286-5|CAB05311.1| 130|Caenorhabditis elegans Hypothetical
protein W02A2.8 protein.
Length = 130
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Frame = +2
Query: 278 DHEVDHSCRHGGY-YCHLR-----SGRGCPDCWCPPGA 373
DH+VD + YCHLR + R CPD W GA
Sbjct: 42 DHDVDRTIYDIPLEYCHLRIPKSRTSRSCPDPWRRYGA 79
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 87 DDYLHTLTPRNYFCTDKYGPSFADSTEWV 1
+D L L N+ CT+ +G + D WV
Sbjct: 376 NDVLRNLKTINFNCTESFGTNINDEEAWV 404
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 481 PASPTMPMAKPAARPENPTAKPAP 410
PA P A PAA P+ A+PAP
Sbjct: 507 PAPAPAPEAAPAAAPDAAPAEPAP 530
>U97005-9|AAK72085.1| 829|Caenorhabditis elegans Hypothetical
protein F19F10.9 protein.
Length = 829
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 407 VDEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHR 258
+ P K G L+ N+ + Q +DG DDRN + D+L HR
Sbjct: 676 LQNPNAKSHSGPSLDHLKNKTT--QRIDGQRFDPDDRNAKKADRLNSQHR 723
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 490 PRTPASPTMPMAKPAARPENPTAKPAPKWMNP 395
PR+P PM P+ + P P+P+ NP
Sbjct: 152 PRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNP 183
>U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical
protein F26A1.11 protein.
Length = 239
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 490 PRTPASPTMPMAKPAARPENPTAKPAPK 407
P P SP+ P P +RP+ P P+
Sbjct: 36 PPRPPSPSRPQRPPPSRPQRPPPPRQPR 63
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 481 PASPTMPMAKPAARPENPTAKPAPK 407
P+S +P A+P+A P KP PK
Sbjct: 668 PSSSEVPPAEPSAPEPKPAPKPDPK 692
>Z50177-1|CAA90543.2| 607|Caenorhabditis elegans Hypothetical
protein F46G10.2 protein.
Length = 607
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 428 YSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDG 321
Y TS D+ VKG+V W ++ N ++D V+G
Sbjct: 85 YVTTSGDGDDLIVKGIVKWKVQ-LKNWSTNDTVVEG 119
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 496 AVPRTPASPTMPM-AKPAARPENPTAKPAPKWMNP 395
AVP PA P+ A+PA RP P PAP P
Sbjct: 187 AVPPCPAPAATPVYAQPAPRP-MPVYAPAPACAQP 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,010,378
Number of Sequences: 27780
Number of extensions: 296715
Number of successful extensions: 1202
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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