Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i07
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   0.96 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   6.7  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      24   8.9  

>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 56  YCFRRFLYGLTQ*RNRAGVSNCAVWDSCAISILLTSNVYLWLVLAAD 196
           Y + +  Y + Q   + G+SN     SC  +   TSN Y+W++   D
Sbjct: 265 YIWNKETYAMIQ---QIGISNIYSTFSCHKNTFFTSNSYVWILTPED 308


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 116 LRHLHDSFTELARTGNV*NSSALLSAIFTDT 24
           L+H H+ F  L  + N    S L   +FT T
Sbjct: 460 LQHFHEDFLRLQNSFNCLLDSGLYHQVFTST 490


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 316 RACINKVTLCNTKKKYTQTLML*NFLRFRIP 224
           R C+N      T   YT + M+ NFL+ R P
Sbjct: 202 RRCLNDAAEGGTLTSYTISCMVINFLQKRDP 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,438
Number of Sequences: 5004
Number of extensions: 31663
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)