Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i07
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0385 - 5095410-5095445,5095595-5095796,5095905-5095979,509...    28   3.8  
01_07_0291 + 42555233-42555444,42556515-42556550,42556652-425567...    28   3.8  
07_03_1509 - 27246721-27247350                                         27   6.6  
04_03_0833 + 20147242-20147849,20147937-20148081,20148157-201482...    27   6.6  
01_05_0373 - 21551674-21552867                                         27   8.7  

>04_01_0385 -
           5095410-5095445,5095595-5095796,5095905-5095979,
           5096460-5096484,5097032-5097137
          Length = 147

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 82  ANSVKESCRCLKLRSLGQLCDIYSSHFKCLSLARPRCRCKSARLR 216
           +N    SCRC+K   +   C  +S++  C       CRC + + R
Sbjct: 52  SNDQHRSCRCVKSNCVKLYCPCFSAYGYC----SQNCRCTNCKNR 92


>01_07_0291 +
           42555233-42555444,42556515-42556550,42556652-42556796,
           42556885-42556938,42557130-42557260,42557830-42558056,
           42558670-42558846,42558928-42559076
          Length = 376

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 254 ALKLSKI*NPYYRRKRALLHLQRGR 180
           A ++S++  PY RR RA+ HL++GR
Sbjct: 220 AFRMSEVAEPYIRR-RAVRHLEKGR 243


>07_03_1509 - 27246721-27247350
          Length = 209

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 145 IYSSHFKCLSLARPRCRCKSARL 213
           + SSH   ++L+ PRCR  S+RL
Sbjct: 59  VVSSHLPTVALSLPRCRPASSRL 81


>04_03_0833 +
           20147242-20147849,20147937-20148081,20148157-20148210,
           20148297-20148388,20148957-20149093,20149210-20149464,
           20149598-20149771,20149863-20149960
          Length = 520

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 254 ALKLSKI*NPYYRRKRALLHLQRGR 180
           AL + ++  PY RR RA+ HL++GR
Sbjct: 379 ALMMQEVAEPYIRR-RAIRHLEKGR 402


>01_05_0373 - 21551674-21552867
          Length = 397

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 110 VSNCAVWDSCAISILLTSNVYLWLVLAA 193
           +    +WDS A  +LL  N   W+VL A
Sbjct: 143 IRRMGLWDSIARDVLLLENQIPWVVLEA 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,339,609
Number of Sequences: 37544
Number of extensions: 217373
Number of successful extensions: 538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)