Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i07
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF016655-8|AAK31439.1|  186|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical
           protein F18E2.3 protein.
          Length = 1096

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 70  FPVRANSVKESCRCLKLRSLGQLCDIYSSHF 162
           F  R   V    RC+ ++ LG   D+Y  HF
Sbjct: 320 FVHRYRDVVPDIRCICIQELGHWMDVYPEHF 350


>U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical
           protein F45E4.7c protein.
          Length = 784

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 65  RRFLYGLTQ*RNRAGV-SNCAVW--DSCAISILLTSNVYLWLVLAAD 196
           RR ++ +T    R G  S C++W    CA+  LL+  ++L  V+  D
Sbjct: 91  RRIIFPITPFYRRKGTCSKCSIWLGALCALFFLLSIALFLVWVITTD 137


>U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical
           protein F45E4.7a protein.
          Length = 868

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 65  RRFLYGLTQ*RNRAGV-SNCAVW--DSCAISILLTSNVYLWLVLAAD 196
           RR ++ +T    R G  S C++W    CA+  LL+  ++L  V+  D
Sbjct: 175 RRIIFPITPFYRRKGTCSKCSIWLGALCALFFLLSIALFLVWVITTD 221


>AF016655-8|AAK31439.1|  186|Caenorhabditis elegans Hypothetical
           protein C17F4.7 protein.
          Length = 186

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 247 NFLRFRIPT-TDASVHSYICSEDE 179
           NF     P  TD ++HSY+CS++E
Sbjct: 21  NFADCPFPNGTDKAIHSYMCSDNE 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,589,974
Number of Sequences: 27780
Number of extensions: 190495
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)