Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i02
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.4  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   5.8  
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    25   5.8  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   7.7  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    25   7.7  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       25   7.7  

>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 58  GRICAHLIVRKH-HMVQQHVAKVHGLEQL 141
           G   A +I+  H +MVQQH+ ++  L+Q+
Sbjct: 341 GAAYARIIIGSHDYMVQQHLLEIEQLQQI 369


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 195 TLWTAFKTTEAHEVVYEMKLFQA 127
           +L T   TTE HE  Y  KL +A
Sbjct: 383 SLTTGLSTTEGHETGYSRKLHEA 405


>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 302 PTRPCWWDTWQHSTNLNTYN 243
           P R CWWD+   ST++ TYN
Sbjct: 251 PARKCWWDS---STSI-TYN 266


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 347 FAFVSVDGLVYFVQHVDKPIFDSY 418
           FA V     +YF  H+D+P+ D Y
Sbjct: 24  FAVVMARIALYFHNHLDEPLVDPY 47


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 392 VDKPIFDSYIGAQFN*LYTNAY*SLLQRVLVYKQIALNI 508
           V +P       AQF+   TN   SLL  + +Y+Q+A N+
Sbjct: 12  VQRPSAGPVNQAQFSQQRTNQLTSLLHTMTMYQQLAQNV 50


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 290 CWWDTWQHSTNLNT 249
           CW DTWQ  T +NT
Sbjct: 189 CWGDTWQ-DTKMNT 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,009
Number of Sequences: 5004
Number of extensions: 52393
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)