Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc27i02
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0202 - 6770448-6770561,6771185-6771279,6771638-6771686,677...    30   1.5  
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536...    30   1.5  
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733...    29   2.6  
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    28   5.9  
09_04_0701 + 19583386-19583554,19584290-19584441,19585123-195851...    27   7.8  
08_01_0185 + 1558580-1558755,1558848-1559737,1559828-1559919,156...    27   7.8  
01_06_1292 - 36037741-36039306                                         27   7.8  

>10_02_0202 -
           6770448-6770561,6771185-6771279,6771638-6771686,
           6771795-6771843,6772035-6772228
          Length = 166

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 309 LCTYTAMLVGYMATFNEFEHLQYWPLLSFLMSVALNAPTLWTA 181
           L  + A+++G       +    YW LL  L +V LN   +WTA
Sbjct: 50  LNAFGAIVLGAPIGIKYWAATTYWSLLMSLFTVVLNVSAIWTA 92


>09_06_0176 +
           21351884-21352693,21352821-21352976,21353425-21353613,
           21354741-21356354,21356446-21356553,21356649-21357509,
           21357586-21357632,21358591-21358697,21359512-21359630,
           21359706-21359915,21360412-21360693,21360820-21360952,
           21361256-21361413,21362564-21362647,21362949-21363035
          Length = 1654

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/77 (16%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = -2

Query: 327 SYINVTLCTYTAMLVGYMATFNEFEHLQYWPLLSFLMSVA-LNAPTLWTAFKTTEAHEVV 151
           S ++ +L   ++ L   +    +F++ Q+WPL+    ++  L    +WT +  T +   +
Sbjct: 122 SSVDASLSLASSYLTKVVLKHFDFDYGQFWPLIDACPALENLELLDVWTFYSVTISSSSL 181

Query: 150 YEMKLFQAMYFSNVLLN 100
             +++   ++++   +N
Sbjct: 182 KHLRIVSCLFYNGFRIN 198


>04_03_0927 +
           20871487-20871903,20872667-20872812,20873204-20873301,
           20873378-20873572,20873670-20873797,20873892-20874050,
           20875119-20875223,20875449-20875559,20875653-20875790,
           20875909-20876091,20876362-20876517,20876615-20876738,
           20876820-20877030,20877614-20877729,20877828-20878053,
           20878218-20878311,20879198-20879275,20879822-20879971,
           20880086-20880292,20880584-20880788,20880990-20881096
          Length = 1117

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 88  KHHMVQQHVAKVHGLEQLHFVNYFMGFCGFERR 186
           K + + QH+ ++H   +L F+N F+ F G+  R
Sbjct: 735 KSYDISQHLHEIHESVRLAFLNSFLDFAGYLER 767


>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 229 QQRPVL*VFKFVECCHVSH 285
           +Q+PVL  + F+ CCH SH
Sbjct: 97  RQKPVL--YTFINCCHTSH 113


>09_04_0701 +
           19583386-19583554,19584290-19584441,19585123-19585181,
           19585319-19585344,19585407-19585758,19586184-19586667
          Length = 413

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 413 NQKWVCPRVAQNTQGHRPTQKRSLPMLRCRTLT 315
           NQ+ + P +  N+  HRPT +R+  +   R+LT
Sbjct: 237 NQQRLRPHMHDNSLFHRPTARRASNLAHLRSLT 269


>08_01_0185 +
           1558580-1558755,1558848-1559737,1559828-1559919,
           1560018-1560086,1560218-1560316
          Length = 441

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -2

Query: 375 TRPSTDTKA--KPPY--AALSYINVTLCTYTAMLVGYMATFNEFE 253
           T PST  K   KP +    ++YI V LC +   LVGY A  N  +
Sbjct: 246 TIPSTPEKPSKKPMWKGVVVAYIIVALCYFPVALVGYWAFGNHVD 290


>01_06_1292 - 36037741-36039306
          Length = 521

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 49  VDRGRICAHLIVRKHHMVQQHVAKVHGLEQLHFVN 153
           VDRG + +H + RKH+    +   +HG+E +   N
Sbjct: 208 VDRGFVRSHRMQRKHYRGLSNPQCIHGIEVVRSPN 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,521,930
Number of Sequences: 37544
Number of extensions: 338107
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)